Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19100 174 / 4e-55 PAM68 photosynthesis affected mutant 68, Protein of unknown function (DUF3464) (.1) AT5G52780 75 / 9e-17 Protein of unknown function (DUF3464) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007593 [exp] 254 / 1e-80 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2) Lus10038849 [exp] 79 / 8e-18 AT5G52780 131 / 2e-38 Protein of unknown function (DUF3464) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G132001 [exp] 164 / 1e-50 AT4G19100 153 / 2e-46 photosynthesis affected mutant 68, Protein of unknown function (DUF3464) (.1) Potri.004G072900 [exp] 64 / 1e-12 AT5G52780 101 / 2e-27 Protein of unknown function (DUF3464) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11947 [flax] [poplar] DUF3464 Photosynthesis affected mutant 68
Representative CDS sequence Show only first row Show all	>Lus10012152 pacid=23154993 polypeptide=Lus10012152 locus=Lus10012152.g ID=Lus10012152.BGIv1.0 annot-version=v1.0 ATGAGAGAGTTCATTGTCTTGTCTTTCGATGCTACTGAGTCAATTGCAGTGACTTTTCCCCAAAGTTGTGAACTTCCAGCCACAATCAGATTCCCCATTA CAGCACCAAACACTTCTTCCTTCACACCATCCACTTCAGCTCCAGTTCTGCTACTACATGCAACCAACAACCCAAGAGGGTTTGGGAAGTCCCTCAAGAA ACCCAAAAAGGGCAAGAAGACACTAACCTACAACGACAAGGAAGAATCCAACGACGACGACGATGATGTCGAAGAAGAATCTAGACGAGATTCAGGGGTG ATACCGGAGGTGGTGACGAACAGGATGATAAGCAGGATGGGGTTCTCAGTAGGGATCCCACTGTTCATAGGGTTAATGTTCTTCCCATTATTTTACTACT TAAAAGTCGTGCAGAAGATCGATGTCCCGAACTGGGTTCCTTTCATCGTGTCCTTCGTCTTCTTCGGGACGGCCTTGTTGGGTGTGAGCTATGGGATTGT GTCCTCCAGTTGGGATCCCTTGAGGGAAGGGTCTCTTCTGGGTTGGACTGAGGCTCAGAGGAATTGGCCTGTCTTTTGGGGCTCTATCTGGGGCGGTGGT GGTAGTTCTGATAAGAAGTTGTGA
AA sequence Show only first row Show all	>Lus10012152 pacid=23154993 polypeptide=Lus10012152 locus=Lus10012152.g ID=Lus10012152.BGIv1.0 annot-version=v1.0 MREFIVLSFDATESIAVTFPQSCELPATIRFPITAPNTSSFTPSTSAPVLLLHATNNPRGFGKSLKKPKKGKKTLTYNDKEESNDDDDDVEEESRRDSGV IPEVVTNRMISRMGFSVGIPLFIGLMFFPLFYYLKVVQKIDVPNWVPFIVSFVFFGTALLGVSYGIVSSSWDPLREGSLLGWTEAQRNWPVFWGSIWGGG GSSDKKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19100		PAM68	photosynthesis affected mutant...		Lus10012152 [exp]	0	1
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10000520 [exp]	1.0	0.9639
AT3G56910		PSRP5	plastid-specific 50S ribosomal...		Lus10035720 [exp]	2.4	0.9609
AT5G44520			NagB/RpiA/CoA transferase-like...		Lus10008059 [exp]	3.5	0.9583
AT1G49975			unknown protein		Lus10033771 [exp]	4.5	0.9538
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10030194 [exp]	9.9	0.9431
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10025799 [exp]	10.2	0.9559
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10035171 [exp]	10.4	0.9372
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10008131 [exp]	11.8	0.9435
AT3G56910		PSRP5	plastid-specific 50S ribosomal...		Lus10037307 [exp]	14.2	0.9477
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10016811 [exp]	14.3	0.9487

Compare expression of checked genes

Lus10012152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.