Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06500 49 / 5e-07 MADS AGL96 AGAMOUS-like 96 (.1) AT1G65300 48 / 1e-06 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007592 [exp] 270 / 3e-93 AT5G26650 66 / 8e-13 AGAMOUS-like 36 (.1) Lus10021399 [exp] 76 / 2e-17 AT5G48670 84 / 1e-19 AGAMOUS-like 80 (.1) Lus10004150 [exp] 76 / 2e-16 AT1G65330 84 / 8e-19 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) Lus10016180 [exp] 71 / 7e-15 AT5G26650 84 / 5e-19 AGAMOUS-like 36 (.1) Lus10029367 [exp] 67 / 2e-13 AT5G06500 88 / 1e-20 AGAMOUS-like 96 (.1) Lus10022325 [exp] 48 / 1e-06 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1) Lus10020789 [exp] 42 / 0.0002 AT5G58890 91 / 9e-21 AGAMOUS-like 82 (.1) Lus10022316 [exp] 41 / 0.0003 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068132 [exp] 71 / 4e-15 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.006G201700 [exp] 70 / 4e-14 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.005G002400 [exp] 47 / 3e-06 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.013G001700 [exp] 39 / 0.001 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012154 pacid=23154981 polypeptide=Lus10012154 locus=Lus10012154.g ID=Lus10012154.BGIv1.0 annot-version=v1.0 ATGGGAAGTAAGGCGAAGTTGGCACTGATCGAAAGCGAAGCCGAGCGAGCTGCCACCATGAAGAGGCTAACCGAAGAGCTAGTGAAGGAGACTGAGGAGC TGTCTACCATTTGCGGGGTAGACACATTGCTGGTGGTCTACAACGGCCCGAATTATGCTGAACCCTCAGCGGTCTGGCCACCGGATCCGACCAAGGTGAT GGAGAGGTATATGGCGATGTCTGTTGCAGAGCGCACTGCGAACACCTCAGACATCGAGAGCGAGCTCATCAAGAAAATAGAAAAGATGGAGCGAAAACAG GCCGAGCAGATTGCCCGGAACAAGAAGCTCGAGTTCGATGTGCTGATGGATGAGGTTCACTATGGGAAGGGGCTGGATAATTTCGACCCCAACGAACTGG CATTGCTCGAGCAGCACCTGAATGAGCGAATTGCGGAGCTTAAGCGTCTCAAGCTCAAGGGAGTGCGGGAAGGAGCTGGAGAGGGCATTAACGATGCCGC GTCAGGGTCAGGCAGCGGCGAGCTTGGCAATGGAGGATCCACCGACAGCGGTGAGCCAAAATCGGAGCAGATAGATAACTAA
AA sequence Show only first row Show all	>Lus10012154 pacid=23154981 polypeptide=Lus10012154 locus=Lus10012154.g ID=Lus10012154.BGIv1.0 annot-version=v1.0 MGSKAKLALIESEAERAATMKRLTEELVKETEELSTICGVDTLLVVYNGPNYAEPSAVWPPDPTKVMERYMAMSVAERTANTSDIESELIKKIEKMERKQ AEQIARNKKLEFDVLMDEVHYGKGLDNFDPNELALLEQHLNERIAELKRLKLKGVREGAGEGINDAASGSGSGELGNGGSTDSGEPKSEQIDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06500	MADS	AGL96	AGAMOUS-like 96 (.1)		Lus10012154 [exp]	0	1
					Lus10041024 [exp]	6.9	0.9513
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	11.0	0.9323
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032211 [exp]	11.9	0.8939
					Lus10038463 [exp]	13.5	0.9319
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	15.6	0.9312
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10019716 [exp]	15.6	0.9155
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	17.5	0.9312
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	19.1	0.9312
					Lus10012107 [exp]	20.6	0.7818
					Lus10005830 [exp]	20.7	0.9312

Compare expression of checked genes

Lus10012154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.