Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31817 166 / 1e-50 NFD3 NUCLEAR FUSION DEFECTIVE 3, Ribosomal L18p/L5e family protein (.1) ATCG00750 52 / 8e-09 ATCG00750.1, RPS11 ribosomal protein S11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007591 [exp] 276 / 2e-96 AT1G31817 166 / 1e-51 NUCLEAR FUSION DEFECTIVE 3, Ribosomal L18p/L5e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G117700 [exp] 171 / 1e-52 AT1G31817 154 / 2e-44 NUCLEAR FUSION DEFECTIVE 3, Ribosomal L18p/L5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF00411 [flax] [poplar] Ribosomal_S11 Ribosomal protein S11
Representative CDS sequence Show only first row Show all	>Lus10012155 pacid=23154960 polypeptide=Lus10012155 locus=Lus10012155.g ID=Lus10012155.BGIv1.0 annot-version=v1.0 ATGTACTCTGCAATCTCGCACATTCGCAACAGTAGAGCAGCTCTATCCTCCTTCTCTTCTTCTGCTTCATCTTTGCTCCGTAGCCATGGCGGGTTCTCCA CATTCTCACCTTTCTCTGCTCCCTCCCCTGCTTCTCCAGGTCCCAACCACGAGTCGAACAGGAACACGAAGCCAATGGACTATGTGAGGACAATTATGGA TGAAAATGCTCAATTCACTAAGCACACCACCGAGGGAAACGAAGAGGTTGTCCACATAAAGCTGCTGCGAAACAACACCTTCGTCACAGTGACAGACCAG AAAGGGAACACCAAGGTTGGAGGGCTCAAGGCTTCGTCAGGGATGGTGCCTGAGCTTAAAGGAGGGCCTAAGCTCTCTCGTTACGTTGCTGAAGCAACTT CGGAGCACGTTGGGAGGAAGTCCAGAGAAATGGGGCTTAGATCGGTCGTGATTAAGGTCAACGGGTTTACCTTCTTCAAGAAGAAGAGGCAAGCTATCAT GAGCTTCAAAGAAGGGTTCGGCCACAATATCGCTGCCATTGAAGACACTACGCGCAAGCCACATAATGGTTGCAGGCTGCCGAAGAAGCGCCGGATCTAG
AA sequence Show only first row Show all	>Lus10012155 pacid=23154960 polypeptide=Lus10012155 locus=Lus10012155.g ID=Lus10012155.BGIv1.0 annot-version=v1.0 MYSAISHIRNSRAALSSFSSSASSLLRSHGGFSTFSPFSAPSPASPGPNHESNRNTKPMDYVRTIMDENAQFTKHTTEGNEEVVHIKLLRNNTFVTVTDQ KGNTKVGGLKASSGMVPELKGGPKLSRYVAEATSEHVGRKSREMGLRSVVIKVNGFTFFKKKRQAIMSFKEGFGHNIAAIEDTTRKPHNGCRLPKKRRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10012155 [exp]	0	1
AT5G41685			Mitochondrial outer membrane t...		Lus10016473 [exp]	1.0	0.8737
AT3G26360			Ribosomal protein S21 family p...		Lus10006466 [exp]	1.4	0.8575
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10029320 [exp]	4.2	0.8316
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10004885 [exp]	5.0	0.8069
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	5.2	0.7746
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10003632 [exp]	5.7	0.8103
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10023702 [exp]	6.5	0.7926
AT1G22950			2-oxoglutarate (2OG) and Fe(II...		Lus10000171 [exp]	6.7	0.7668
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10041296 [exp]	8.4	0.7719
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10008088 [exp]	11.3	0.7601

Compare expression of checked genes

Lus10012155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.