Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45390 287 / 3e-97 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G66670 184 / 1e-56 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT1G02560 166 / 6e-50 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT1G11750 155 / 4e-46 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) AT5G23140 144 / 7e-42 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT4G17040 126 / 2e-34 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) ATCG00670 122 / 3e-34 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1) AT1G12410 120 / 2e-32 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) AT1G09130 110 / 2e-28 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT1G49970 101 / 1e-24 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007589 [exp] 476 / 3e-172 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10010979 [exp] 177 / 7e-54 AT1G66670 288 / 6e-97 CLP protease proteolytic subunit 3 (.1) Lus10000449 [exp] 177 / 1e-53 AT1G66670 285 / 1e-95 CLP protease proteolytic subunit 3 (.1) Lus10002422 [exp] 162 / 2e-48 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10001450 [exp] 163 / 5e-48 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10025022 [exp] 158 / 1e-46 AT1G02560 313 / 3e-107 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10010003 [exp] 157 / 2e-46 AT1G02560 308 / 2e-105 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10017397 [exp] 147 / 4e-43 AT5G23140 394 / 1e-140 nuclear-encoded CLP protease P7 (.1) Lus10010196 [exp] 147 / 6e-43 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G103300 [exp] 306 / 1e-104 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.001G130601 [exp] 192 / 5e-61 AT5G45390 239 / 2e-79 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.004G092100 [exp] 191 / 3e-59 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.014G119700 [exp] 164 / 3e-49 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.002G195200 [exp] 164 / 4e-49 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.004G152900 [exp] 160 / 4e-48 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.009G114001 [exp] 156 / 3e-46 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.005G092600 [exp] 150 / 3e-44 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.007G071700 [exp] 148 / 4e-43 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.003G083300 [exp] 125 / 4e-34 AT4G17040 441 / 2e-157 happy on norflurazon 5, CLP protease R subunit 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00574 [flax] [poplar] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Lus10012156 pacid=23155004 polypeptide=Lus10012156 locus=Lus10012156.g ID=Lus10012156.BGIv1.0 annot-version=v1.0 ATGAAGCTCCTCTCAATCTCATCTCCTTCAGCTTTAATCCCTCAAAAGTCTCACCTGAAACCCAGAACACCACCACATCTCTTCTCCTCCTCATTCTCCT TCCCCACAAATTTCAGCTCCTCCCCATCTCTCAAAACCTCCGCCGCCGTCGGAGGCGCCGTCAAGCCGATCAGCTCCGACGCAGTGGGGATGCTTCTCGA GGAGAGGATTCTGTTCCTAGGGAAGGAGATTAACGACGTCAGAGCAGACGCTATTGTCAGCCGGTTGCTGCTCCTCGATGCTCAGGATCCCACCAGGGAC ATTCGTCTAATGATCAATTGCCATGGCGGCTCCCTCAGCGCAGCGATGGCCATCTACGACATAATGCAGCTGGTGAGGGCAGAGGTGTCGACCATCGCAG TAGGGATGGCAGGATCGACGGCTGCCCTAATCCTGGGAGGGGGCACACGAGGGAAGAGATTCGCGATGCCCAACGCGCGTGTGATGATACACCAGCCGCA AGGGGGAGTCAGTGGGAGGGTGGCTGACGTGGAGGTCCAAGTGAAGGAGATAATGCAGAACAAGAAGGACGTGATGAAGATAATCTCGAGCTGCAGTGGC CGGACGATGGAGCAGGTCGAGGAAGACATCCGCTGGGACAAGTACATGTCCCCTATCGAGGCGGTTGAGTATGGGCTCATCGATGGCATTATCGACAGGG ACAGCGTCGTCCCTTTGGCTCCTGTGCCGGAGCATATACCGGGGACGTTGTACGCTGAGATGGTGAGCAAAGGTGGGAAGGAGTTTGTTGCCGCAAGTGT ACCTGATGATGAGATTTACTAG
AA sequence Show only first row Show all	>Lus10012156 pacid=23155004 polypeptide=Lus10012156 locus=Lus10012156.g ID=Lus10012156.BGIv1.0 annot-version=v1.0 MKLLSISSPSALIPQKSHLKPRTPPHLFSSSFSFPTNFSSSPSLKTSAAVGGAVKPISSDAVGMLLEERILFLGKEINDVRADAIVSRLLLLDAQDPTRD IRLMINCHGGSLSAAMAIYDIMQLVRAEVSTIAVGMAGSTAALILGGGTRGKRFAMPNARVMIHQPQGGVSGRVADVEVQVKEIMQNKKDVMKIISSCSG RTMEQVEEDIRWDKYMSPIEAVEYGLIDGIIDRDSVVPLAPVPEHIPGTLYAEMVSKGGKEFVAASVPDDEIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10012156 [exp]	0	1
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037908 [exp]	1.0	0.8904
AT1G49510		EMB1273	embryo defective 1273 (.1)		Lus10027929 [exp]	2.4	0.8489
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10003138 [exp]	2.4	0.8310
AT3G24030			hydroxyethylthiazole kinase fa...		Lus10023688 [exp]	4.0	0.7964
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10019497 [exp]	6.0	0.8104
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10021244 [exp]	6.3	0.7683
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	8.1	0.8095
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	10.6	0.7970
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	11.0	0.8021
AT5G46850			unknown protein		Lus10040093 [exp]	11.5	0.7117

Compare expression of checked genes

Lus10012156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.