Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27230 150 / 5e-42 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G01240 154 / 7e-42 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G40830 149 / 2e-41 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G05390 145 / 9e-40 unknown protein AT1G29790 108 / 8e-27 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007588 [exp] 447 / 3e-157 AT5G40830 232 / 6e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020803 [exp] 214 / 4e-66 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 202 / 6e-62 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010138 [exp] 149 / 5e-41 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024318 [exp] 139 / 8e-38 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10035135 [exp] 140 / 1e-37 AT4G01240 367 / 1e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004494 [exp] 138 / 4e-37 AT3G05390 699 / 0.0 unknown protein Lus10029907 [exp] 138 / 4e-37 AT3G05390 697 / 0.0 unknown protein Lus10034506 [exp] 136 / 2e-36 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G231100 [exp] 347 / 7e-118 AT3G05390 287 / 2e-92 unknown protein Potri.017G135100 [exp] 224 / 3e-70 AT3G05390 278 / 3e-89 unknown protein Potri.004G083800 [exp] 221 / 6e-69 AT3G05390 278 / 3e-89 unknown protein Potri.005G236600 [exp] 155 / 1e-43 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 155 / 1e-43 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G019400 [exp] 148 / 7e-41 AT3G05390 753 / 0.0 unknown protein Potri.002G165300 [exp] 144 / 4e-39 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G116900 [exp] 141 / 5e-38 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G079000 [exp] 115 / 3e-29 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G352700 [exp] 112 / 3e-28 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012157 pacid=23154992 polypeptide=Lus10012157 locus=Lus10012157.g ID=Lus10012157.BGIv1.0 annot-version=v1.0 ATGGGAATCGGGGCAAACGAAGATCACCGCCACTACCACAAGAAGGCTAACAACAACAATGGCGGGGGCAGCAAGTTCAGCATCAAGACAGTGCTTCTAG TCATCTTCACAAACCTCTTCACCATCTACATCTTCACCGGCTTCAACCTCGACGCCGCCACTCGCCTCCAGTCCACCACCACCCACTTCTTCCCCATCTC CGCCGCAGCCTGGAACTCCTCCGAGCTCCACTCCACGAGGCGCCAGCTCGAGGAGTCGAATTCCGTCATCGCCGCCCTCCACCGCCGGCTCAACTCGACC AACCTCCTCCTCCAGTCCCTCTTGATAGAGCTCACAAGCAGAAGTACGGCCAATGAGCAACAACTGCCTGCAGCGGGGGCCACCACTGCTAAGCAGTTGA TCATGAATTTGTTTGAAACTGGCGACGAGGAAGTCAAGCTCGCGATAGGGGCGCATAAATTGCCGTTGGGGTACTCGCCCAGGTCTGGTTCTGATGAGAT CGACTCGCCCGTCGGAGCCGGATGCCTGAACCACCCCAAGGAGTTGGCGCAGTACATGACGTACGATGTCGGAGGGACATGTCCCCCTGATGACGTGTTC GCCCAAAGGCTGATGCTCAAAGGGTGCGAGCCCCTCCCTCGCAGGAGGTGCCACCCGATGATTCCGGCTAACTATGTCGAGCCGACGAGTTATCCGAAGT CGCTCTGGACGACCCCGTCGGATGCCAGTATAGTCTGGCACCCTTACACTTGTAAGAGCTACAAGTGTCTAGTGAACCGCAGTAAGGCGCCCGGTTTCTA CGACTGCAAGGACTGTTTTGACCTCCGAGGCAGAGAGAGCTCGCGGTGGATGGTCGACAGAGGCGGGCTCGATTTCGGGATCGACGAGGTCCTAAAGAAA AAACCGGCTGGAACTATCCGGATCGGGATGGATATTGGCGGCGGGAGCGGGACATTTGCGGCCCGAATGGCTGAGCGGAACCGCGGCGCGAATGGCTGA
AA sequence Show only first row Show all	>Lus10012157 pacid=23154992 polypeptide=Lus10012157 locus=Lus10012157.g ID=Lus10012157.BGIv1.0 annot-version=v1.0 MGIGANEDHRHYHKKANNNNGGGSKFSIKTVLLVIFTNLFTIYIFTGFNLDAATRLQSTTTHFFPISAAAWNSSELHSTRRQLEESNSVIAALHRRLNST NLLLQSLLIELTSRSTANEQQLPAAGATTAKQLIMNLFETGDEEVKLAIGAHKLPLGYSPRSGSDEIDSPVGAGCLNHPKELAQYMTYDVGGTCPPDDVF AQRLMLKGCEPLPRRRCHPMIPANYVEPTSYPKSLWTTPSDASIVWHPYTCKSYKCLVNRSKAPGFYDCKDCFDLRGRESSRWMVDRGGLDFGIDEVLKK KPAGTIRIGMDIGGGSGTFAARMAERNRGANG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10012157 [exp]	0	1
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10012158 [exp]	1.0	0.9842
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	4.7	0.9809
AT1G06930			unknown protein		Lus10009929 [exp]	5.5	0.9776
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	6.6	0.9750
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10019400 [exp]	7.4	0.9679
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	7.9	0.9742
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	8.7	0.9619
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	8.9	0.9748
AT5G54370			Late embryogenesis abundant (L...		Lus10033540 [exp]	9.2	0.9742
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10042688 [exp]	9.4	0.9322

Compare expression of checked genes

Lus10012157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.