Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40830 115 / 1e-31 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G05390 114 / 9e-31 unknown protein AT4G01240 114 / 2e-30 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29790 112 / 2e-30 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G27230 108 / 7e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007588 [exp] 262 / 6e-88 AT5G40830 232 / 6e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 186 / 2e-58 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020803 [exp] 186 / 2e-58 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10015264 [exp] 121 / 7e-34 AT1G29790 504 / 1e-179 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010138 [exp] 119 / 1e-32 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10035135 [exp] 117 / 6e-32 AT4G01240 367 / 1e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024319 [exp] 111 / 1e-31 AT3G27230 268 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031968 [exp] 116 / 2e-31 AT4G01240 372 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025384 [exp] 112 / 2e-30 AT1G29790 501 / 3e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G231100 [exp] 233 / 1e-76 AT3G05390 287 / 2e-92 unknown protein Potri.004G232200 [exp] 195 / 5e-66 AT3G05390 94 / 8e-24 unknown protein Potri.017G135100 [exp] 185 / 2e-58 AT3G05390 278 / 3e-89 unknown protein Potri.004G083800 [exp] 182 / 6e-57 AT3G05390 278 / 3e-89 unknown protein Potri.001G352700 [exp] 126 / 7e-36 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G165300 [exp] 120 / 5e-33 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G236600 [exp] 119 / 8e-33 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 118 / 1e-32 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G079000 [exp] 117 / 2e-32 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.004G116900 [exp] 116 / 1e-31 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10012158 pacid=23154915 polypeptide=Lus10012158 locus=Lus10012158.g ID=Lus10012158.BGIv1.0 annot-version=v1.0 ATGAACCTCGACGGACCCTTCAACAGCTTCATTGCTTCCAGGGGATTGATTCCGATCCATTATACCGTCTCACAGAGGCTTCCGTTCTTCGAGAACACGC TCGACATCGTCCATTCTATGCATATACTGAGCAACTGGATCCCCGACACGATGCTCGAGTTTACTCTTTACGACGTCTATAGAGTGTTGAGGCCCGGTGG GTTGTTCTGGCTCGACCATTTCTTCTGCCTCGGGAATCAGCTCAACAGAACGTATATACCGATGCTCGAACGGGTCGGGTTCAAGAAGCTCAGGTGGCAC GCCGGGATGAAGCTCGACCGTGGCGTCGGGTTCAACGAGTGGTACTTCTCTGCTTTGCTCGAGAAACCCATGACTTGA
AA sequence Show only first row Show all	>Lus10012158 pacid=23154915 polypeptide=Lus10012158 locus=Lus10012158.g ID=Lus10012158.BGIv1.0 annot-version=v1.0 MNLDGPFNSFIASRGLIPIHYTVSQRLPFFENTLDIVHSMHILSNWIPDTMLEFTLYDVYRVLRPGGLFWLDHFFCLGNQLNRTYIPMLERVGFKKLRWH AGMKLDRGVGFNEWYFSALLEKPMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10012158 [exp]	0	1
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10012157 [exp]	1.0	0.9842
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	3.0	0.9653
AT3G21710			unknown protein		Lus10027176 [exp]	5.1	0.9454
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10038531 [exp]	6.1	0.9379
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	6.2	0.9699
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10005544 [exp]	8.0	0.9622
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10035971 [exp]	11.5	0.9589
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	14.0	0.9619
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	15.2	0.9571
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10002026 [exp]	15.5	0.9210

Compare expression of checked genes

Lus10012158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.