Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49760 981 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 895 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 866 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 819 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 461 / 3e-146 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 386 / 5e-120 Leucine-rich repeat protein kinase family protein (.1) AT5G49750 333 / 2e-103 Leucine-rich repeat (LRR) family protein (.1) AT5G37450 317 / 6e-93 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 315 / 3e-92 Leucine-rich repeat protein kinase family protein (.1) AT3G04690 280 / 2e-80 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007587 [exp] 1581 / 0 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 459 / 6e-152 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 448 / 2e-141 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 441 / 2e-138 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 431 / 1e-134 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 390 / 3e-126 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 393 / 7e-121 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 381 / 1e-116 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 366 / 7e-111 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G231700 [exp] 1164 / 0 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 1151 / 0 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 1016 / 0 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G046450 [exp] 958 / 0 AT5G49760 865 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 943 / 0 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231500 [exp] 912 / 0 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 887 / 0 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 887 / 0 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231200 [exp] 852 / 0 AT5G49760 759 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 852 / 0 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10012159 pacid=23154898 polypeptide=Lus10012159 locus=Lus10012159.g ID=Lus10012159.BGIv1.0 annot-version=v1.0 ATGGGTGGTATTACTACCACTTCTTGTGCCAGAGCTCTGGAGTTTCTTCTTCTGGTTCCGTTGTGTGCCTTTTTATTCTTCACCGCCGGTGAGGCGGCCA CCAACGGCGGCGACTGTAAGAACTTCTTTGGTTTCTGGGTTTTGATTGTGGGGTTTCTCTGTTTTGTTCATATTGCTTACTGGACATACTGGTCGAACCA CATAAAATTCGTGTCTGTACGCATTCTCCCCTCCCGGTGGCTAACGAAAAAGGATCGAAACTTTGTTGCAGTGAGTGTTCTGAATTCACTGAAAGACGTC TGGGGAAACACTCCGCCCAATTGGGTAGGTGGAGATCCTTGTGGTGACAATTGGGAAGGCATTAGCTGTACCGGTACCAGAGTGACCTCAATAATATTGT CAAGCACAGGATTATCCGGTCAACTCTCGGGAGACATCTCATCCTTATCAGAGTTGATCATCTTGGACCTTTCATACAACAAAGGCTTAAGAGGGTCTCT CCCACAGTCCATTGGTAACTTGAAGAAGCTAGTCAACCTGATTCTGGTTGGCTGTAGCTTCACCGGTCCGATTCCTGAGTCGATAGGATCACTTTCCAGG CTCACTTACTTATCACTGAACTCGAATGGCTTCACTGGGACGATTCCGGCCTCGATTGGCAACCTCATCAACCTGTACTGGCTCGACCTGGCCGATAACC AGCTCGAAGGGGGAATCCCGGTCTCGACTGGGGACACGCCTGGTCTTGATCTTTTGGTCAACACAAAGCATTTCCATCTTGGGAAGAATCAGCTCACTGG CTTAATCCCTACCAAGCTCTTCAACTCCAACATGACTCTCATCCATGTGCTATTTGACAGTAACAAGCTGACAGGCCCCATCCCTCCTTCACTCTCCCTG GTGGCAACATTGGAAGTCTTGCGGTTGGACAGGAACGCGCTGACTGGACCTGTCCCTACAGGATTCAACAATCTTGCAAGCATCGGCGAACTGAGTTTAT CCAACAATAACCTGAATGGTACATTCCCAACCCTGACAGAAATGCAAGTTCTCAGCACTCTGGATCTGAGCAACAACAGCTTCAACTCGACGGGCTTCCC TTCGTGGATATCGTCGATGGCTTCGTTAACAACACTGGTGCTGGAGAACACACAGATCGGAGGACCGGTTCCGAGCAATCTGTTCAGCCTTTCGAATTTG CAGACAGTGAACATGAAGAGGAATGATTTGAATGGCAGTTTGGACATTGGACCATCCTACAGTAGTCAGCTTGGAATAGTTGATCTGCAATCCAACTTCA TTTCTGGCTACAGGCAGCGGCCTGGATCGAACGAGATCAATATCGAGTTGCTTCGCAACCCGGTTTGCGACGAAATCGGAACCGGACCAACGCCGCCATA CTGCACCATTTCGGCTCCGGACTCCCGATACACAACACCACCGAACAACTGCATTCCGGGGGATTGTCCTTCGAACAAGACCGCCAGCCCGAACTGCCTT TGCGCATTCCCATACACCGGTCTCTTCGTCCTCAGGTCGCCTTCCTTCTCCGACTTGGGGAACGGAACCATCTACACCATGCTTCAAAAATCGCTCATGG ACAGCTTCAGGGCGAACCAGCTAGCGGTCGACTCCGTCCAGCTCAGCAACCCAAGGAAGGACACGTCGGATTATCTCGACATCGACCTGAAAGTGTTCCC CAACGGTCAGGATTACTTCAATCGGACTGGGATTTCGAGGATTGCTTTCGTGTTGAGTAATCAGACGTTTAAGCCGCCCAAGATGTTCGGCCCGTTTGTC TTCATCGGTGATGAGTACAGGGCTTTTGACGGGGGACTATCGGGGTCGAAGAAGTCGACAAGCACCGGGATTATTGTCGGAGCTGCCATAGGTGGAGCAG TGCTCGTGCTGCTGGTGCTCCTCGCCGGAGTCTATGCTTACCGGCAGAAGAAGAGAGCGGAGAAAGCAACTGAGCAGAGCCACAATCCTTTCGCTCACTG GGACGCAACTCAAACCACCGGCGGCTTCCCGCAGTTGAAAGGAGCTCGATGCTTCTCCTTCGACGAGCTCAAGAAATACACCAACAATTTCTCCGACGCC AATGGCATTGGCTCTGGCGGCTACGGCAAGGTGTACAGAGGGGTACTTCCGGCGGGGCAGCTTATAGCGATAAAGCGGGCGCAGAGGGAATCAATGCAAG GCGGGGTTGAATTCAAGACGGAGATTGAATTGCTGTCTAGGGTTCATCACAAGAACGTGGTGAGCTTGGTAGGGTTCTGCTTCGAGCAAGGCGAACAGAT GCTTATTTACGAGTACGTCCCCAATGGCACCCTCAGTGACAGCCTCTCAGGAAAGTCTGGGATCACGATGGATTGGACAAGGAGGCTGAAAGTGGCACTT GGAGCAGCAAGAGGACTAGCGTATCTCCATGAGCTAGCAGATCCACCGATCATCCATAGAGACATCAAGACCGCCAATATCTTATTAGACGAGCGATTAA CGGCTAAAGTTGCAGACTTTGGCTTGTCCAAGCTGATGGGCGACGAAGAAAAGGGCCATGTCACCACTCAAGTCAAAGGAACCATGGGGTACTTGGACCC GGAATACTACATGACTCAGCAGTTAACGGAGAAGAGCGACGTGTACAGCTACGGAGTAGTCCTGCTCGAGCTAGTAACGGGACGGAGGCCAATCGAGCGG GGCAAGTACATTGTGAGAGAAATCAAGATGGCAATGGACAAGACCAAAAGCATGTACAACCTCCAAACCTTGATCGACCCGGAGATCACCGCAGAGTCAT TGAAAGGAATTGACAAGTTCATCGACCTAGCGATGTCATGCGTGCACGAATCGGGAGCAGAAAGGCCTACGATGGGGGAAGTTGTTAAGGAGATTGAGCT CATCTTGCAGCAAGCCGGTCTGAACCCGAACGGCGACTCGGTCAACACTTCGGGCGCTTACGAGGATGCAGGGAAAGGAAGCCCTCGCCATCCTTATAGC AAAGAGGCCTTTGAGTACAGTGGAGCTTTGCCTCCTTCCAAGGTTGAGCCACTTTGA
AA sequence Show only first row Show all	>Lus10012159 pacid=23154898 polypeptide=Lus10012159 locus=Lus10012159.g ID=Lus10012159.BGIv1.0 annot-version=v1.0 MGGITTTSCARALEFLLLVPLCAFLFFTAGEAATNGGDCKNFFGFWVLIVGFLCFVHIAYWTYWSNHIKFVSVRILPSRWLTKKDRNFVAVSVLNSLKDV WGNTPPNWVGGDPCGDNWEGISCTGTRVTSIILSSTGLSGQLSGDISSLSELIILDLSYNKGLRGSLPQSIGNLKKLVNLILVGCSFTGPIPESIGSLSR LTYLSLNSNGFTGTIPASIGNLINLYWLDLADNQLEGGIPVSTGDTPGLDLLVNTKHFHLGKNQLTGLIPTKLFNSNMTLIHVLFDSNKLTGPIPPSLSL VATLEVLRLDRNALTGPVPTGFNNLASIGELSLSNNNLNGTFPTLTEMQVLSTLDLSNNSFNSTGFPSWISSMASLTTLVLENTQIGGPVPSNLFSLSNL QTVNMKRNDLNGSLDIGPSYSSQLGIVDLQSNFISGYRQRPGSNEINIELLRNPVCDEIGTGPTPPYCTISAPDSRYTTPPNNCIPGDCPSNKTASPNCL CAFPYTGLFVLRSPSFSDLGNGTIYTMLQKSLMDSFRANQLAVDSVQLSNPRKDTSDYLDIDLKVFPNGQDYFNRTGISRIAFVLSNQTFKPPKMFGPFV FIGDEYRAFDGGLSGSKKSTSTGIIVGAAIGGAVLVLLVLLAGVYAYRQKKRAEKATEQSHNPFAHWDATQTTGGFPQLKGARCFSFDELKKYTNNFSDA NGIGSGGYGKVYRGVLPAGQLIAIKRAQRESMQGGVEFKTEIELLSRVHHKNVVSLVGFCFEQGEQMLIYEYVPNGTLSDSLSGKSGITMDWTRRLKVAL GAARGLAYLHELADPPIIHRDIKTANILLDERLTAKVADFGLSKLMGDEEKGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSYGVVLLELVTGRRPIER GKYIVREIKMAMDKTKSMYNLQTLIDPEITAESLKGIDKFIDLAMSCVHESGAERPTMGEVVKEIELILQQAGLNPNGDSVNTSGAYEDAGKGSPRHPYS KEAFEYSGALPPSKVEPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49760			Leucine-rich repeat protein ki...		Lus10012159 [exp]	0	1
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10019136 [exp]	7.8	0.8912
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10003387 [exp]	10.5	0.8864
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10042282 [exp]	19.9	0.8537
AT2G17650			AMP-dependent synthetase and l...		Lus10028375 [exp]	21.5	0.8666
AT3G18570			Oleosin family protein (.1)		Lus10041987 [exp]	26.4	0.8635
AT3G62260			Protein phosphatase 2C family ...		Lus10038058 [exp]	26.4	0.8446
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028613 [exp]	31.9	0.8654
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10010719 [exp]	33.7	0.8648
AT4G29990			Leucine-rich repeat transmembr...		Lus10038251 [exp]	37.1	0.8751
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10002945 [exp]	42.0	0.8401

Compare expression of checked genes

Lus10012159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.