Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49740 654 / 0 ATFRO7, FRO7 ferric reduction oxidase 7 (.1) AT5G49730 651 / 0 ATFRO6, FRO6 ferric reduction oxidase 6 (.1) AT1G01590 283 / 1e-86 ATFRO1, FRO1 ferric reduction oxidase 1 (.1) AT5G23980 263 / 4e-79 FRO2, ATFRO4, FRO4 ferric reduction oxidase 4 (.1) AT5G23990 261 / 6e-79 ATFRO5, FRO5 ferric reduction oxidase 5 (.1) AT1G01580 262 / 1e-78 FRD1, ATFRO2, FRO2 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) AT1G23020 248 / 1e-73 ATFRO3, FRO3 ferric reduction oxidase 3 (.1.2) AT5G50160 231 / 6e-67 ATFRO8, FRO8 ferric reduction oxidase 8 (.1) AT1G19230 94 / 9e-20 Riboflavin synthase-like superfamily protein (.1.2) AT4G25090 89 / 3e-18 Riboflavin synthase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007586 [exp] 1028 / 0 AT5G49740 867 / 0.0 ferric reduction oxidase 7 (.1) Lus10039268 [exp] 277 / 4e-84 AT1G01580 722 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10014957 [exp] 244 / 2e-72 AT5G23980 665 / 0.0 ferric reduction oxidase 4 (.1) Lus10036379 [exp] 244 / 8e-72 AT1G01580 691 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036381 [exp] 223 / 5e-64 AT1G01580 701 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10019488 [exp] 187 / 4e-51 AT5G50160 691 / 0.0 ferric reduction oxidase 8 (.1) Lus10027507 [exp] 180 / 6e-48 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10029896 [exp] 91 / 6e-19 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10017527 [exp] 90 / 2e-18 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G079000 [exp] 691 / 0 AT5G49730 886 / 0.0 ferric reduction oxidase 6 (.1) Potri.004G079200 [exp] 269 / 1e-81 AT5G23980 870 / 0.0 ferric reduction oxidase 4 (.1) Potri.017G142800 [exp] 268 / 5e-81 AT5G23980 894 / 0.0 ferric reduction oxidase 4 (.1) Potri.014G088000 [exp] 260 / 5e-78 AT1G01580 762 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142700 [exp] 257 / 7e-77 AT1G01580 677 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.004G079100 [exp] 247 / 3e-73 AT1G01580 692 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.015G083200 [exp] 208 / 1e-58 AT5G50160 650 / 0.0 ferric reduction oxidase 8 (.1) Potri.012G084800 [exp] 202 / 1e-56 AT5G50160 657 / 0.0 ferric reduction oxidase 8 (.1) Potri.005G026200 [exp] 92 / 3e-19 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.006G137300 [exp] 91 / 7e-19 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10012161 pacid=23154933 polypeptide=Lus10012161 locus=Lus10012161.g ID=Lus10012161.BGIv1.0 annot-version=v1.0 ATGGAGCTCACGGGGCTACGATTGGGAATGATTGGGATGTTCTGTTTGGCGTTTCTGTTCCTCCCGATCTCGAGAGGATCGATGCTCCTTCGACTCATCG ACATCCCTGTCGAGCACGCGACGAGATACCATGTTTGGTTGGGACACATAACCATGTTGCTGTTCACTCTCCATGGACTGTTCTATGTCGTTGCTTGGAC TGTTCAGGGCAAGCTCTTAGAGGAAATATTGGAGTGGAGGAACATTGGGATATCCAACCTGGCAGGGGTGATTGCCCTCGTGGCAGGTCTGCTGATGTGG GTGACATCCCTAAACCCAGTCAGAAGATGGAACTTTGAGCTATTCTTCTACACACATCAGCTCTACATTGTCTTTGTTCTCTTCTTGGCCTTCCACGTCG GAGACTTCCTCTTCACCATCGCTGCCGGTGGGATCTTCCTCTTCATCCTCGATCGATTCCTCCGCTTCTGCCAGTCCAGGAAGACCGTTGATGTCGTCTC TGCCAAATGCTTCCCCTGTGGCACTGTTGAACTGACCGTCTCCAAGCCTGCAAATCTAAAGTACAATGCTCTGAGTTTCATCTTCATACAAGTCAGGGAG CTATCCCTGCTACAATGGCATCCTTTCAGTGTTTCATCCAGTCCTTTAGAAGGCAAGAATCACATATCAGTTCTCATCAAAGTCCTCGGAGAGTGGACCG ACAAGCTCAAAGATACCATCAAGATCAATACCTCGACAGTCAACAACGATCCTGCATCTCGAAAGATCACAGCTTCTGTTGAAGGTTCATACGGGCACGA GTCACCTTACCACTTGATGTATGAGCACCTTGTTCTAGTTGCAGGAGGCATAGGGATCTCACCCTTCATGGCAATCTTGAGTGATGTCTTTCACAGAGTT AATGAAGGCAAACCCTGCCTACCAAGAGAAATCTTGGTAGTGTGGGCCGTGAAGAAGTCCGATGAGATCGGACTTCTGTCAGCAATGAATCTCGACCGCA TTTGTTCAGATATCTATGACAGGCTCAATTTACGTATCCACATATATGTGACTCGAGAGTTGGATCCCCCACTGGAAGAAGGTAAAGTGTCGACCGTGGC ATCAGGGGTTTCGGCCACCAGGTGCCCTTTCCCGATAGGCAACGATATGTCGGTCTTGGTTGGTACGGGCGATAATGTATGGTCCGGACTTTATATATTG TCGTCGACGTTGGGTTTCATCCTTTCGCTGGCTATTACCGACGCATATTACATAAACCCATATGGGGTAACATCATGGTGGTACAAGGGGCTTCTCCTTG TGGCATGCATGGTTGGAAGCGTGGTTGTTTTCGGCGGCGTGGTTGTTGGATTGTGGCATCTTTGGGGTACAAAGGCTTCAACATTGGAGCAAGATGAGGA AACTAAGGCCAAATTAGTTGATGAAGGTTTGCCTAACGGTACTCCTAATGGGACAAGGATTGTTGAAGATTTGCTTGCTTCGAGTTCAACCTCTATCAAC TATGGTTCAAGACCAGACTTCAAAGAAATAATGCAAAGCATATCGAAGGATTGGGGGCATGTTGATGTTGGCGTGATGGTATGTGGACATCCAACTCTTC AGTCAACGGTTGCCAAGGAAATTAGGGCACACAATTTCAGAAGGAGCTCTGGTGACACTGTGTTCCATTTCAATAGTCACAGTTTTGATCTTTAA
AA sequence Show only first row Show all	>Lus10012161 pacid=23154933 polypeptide=Lus10012161 locus=Lus10012161.g ID=Lus10012161.BGIv1.0 annot-version=v1.0 MELTGLRLGMIGMFCLAFLFLPISRGSMLLRLIDIPVEHATRYHVWLGHITMLLFTLHGLFYVVAWTVQGKLLEEILEWRNIGISNLAGVIALVAGLLMW VTSLNPVRRWNFELFFYTHQLYIVFVLFLAFHVGDFLFTIAAGGIFLFILDRFLRFCQSRKTVDVVSAKCFPCGTVELTVSKPANLKYNALSFIFIQVRE LSLLQWHPFSVSSSPLEGKNHISVLIKVLGEWTDKLKDTIKINTSTVNNDPASRKITASVEGSYGHESPYHLMYEHLVLVAGGIGISPFMAILSDVFHRV NEGKPCLPREILVVWAVKKSDEIGLLSAMNLDRICSDIYDRLNLRIHIYVTRELDPPLEEGKVSTVASGVSATRCPFPIGNDMSVLVGTGDNVWSGLYIL SSTLGFILSLAITDAYYINPYGVTSWWYKGLLLVACMVGSVVVFGGVVVGLWHLWGTKASTLEQDEETKAKLVDEGLPNGTPNGTRIVEDLLASSSTSIN YGSRPDFKEIMQSISKDWGHVDVGVMVCGHPTLQSTVAKEIRAHNFRRSSGDTVFHFNSHSFDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10012161 [exp]	0	1
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10012160 [exp]	1.0	0.9496
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10017471 [exp]	2.4	0.9382
AT4G27360			Dynein light chain type 1 fami...		Lus10038566 [exp]	3.5	0.9108
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Lus10005106 [exp]	5.7	0.9136
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10035846 [exp]	6.3	0.9120
AT5G67370			Protein of unknown function (D...		Lus10011087 [exp]	7.3	0.9144
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021348 [exp]	8.6	0.8393
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10028811 [exp]	11.2	0.8901
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	11.7	0.9085
AT2G27290			Protein of unknown function (D...		Lus10013320 [exp]	11.8	0.9096

Compare expression of checked genes

Lus10012161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.