Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49720 911 / 0 TSD1, IRX2, DEC, RSW2, OR16PEP, KOR1 ,AtGH9A1 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) AT4G24260 766 / 0 ATGH9A3 ,KOR3 glycosyl hydrolase 9A3 (.1) AT1G65610 650 / 0 ATGH9A2 ,KOR2 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) AT1G75680 328 / 2e-105 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT1G19940 322 / 6e-103 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G02800 318 / 9e-102 ATCEL2 cellulase 2 (.1) AT4G02290 305 / 3e-96 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G64390 306 / 8e-96 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 302 / 3e-94 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT3G43860 297 / 6e-94 ATGH9A4 glycosyl hydrolase 9A4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026275 [exp] 978 / 0 AT5G49720 986 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10007584 [exp] 673 / 0 AT5G49720 565 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026863 [exp] 642 / 0 AT1G65610 747 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Lus10036331 [exp] 500 / 1e-170 AT5G49720 483 / 6e-164 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10010029 [exp] 490 / 2e-168 AT5G49720 465 / 1e-158 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10018918 [exp] 421 / 1e-139 AT5G49720 423 / 1e-140 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10028619 [exp] 414 / 6e-137 AT5G49720 410 / 3e-135 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10033156 [exp] 330 / 5e-106 AT1G19940 687 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10034515 [exp] 330 / 1e-105 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151700 [exp] 969 / 0 AT5G49720 910 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.001G078900 [exp] 966 / 0 AT5G49720 904 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.008G079500 [exp] 686 / 0 AT1G65610 699 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.010G177300 [exp] 671 / 0 AT1G65610 724 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.005G188500 [exp] 436 / 1e-145 AT5G49720 418 / 9e-139 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.002G023900 [exp] 332 / 9e-107 AT1G19940 672 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.005G237700 [exp] 329 / 1e-105 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.005G115400 [exp] 323 / 5e-103 AT1G19940 586 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.001G092200 [exp] 320 / 8e-101 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 318 / 2e-100 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10012162 pacid=23154904 polypeptide=Lus10012162 locus=Lus10012162.g ID=Lus10012162.BGIv1.0 annot-version=v1.0 ATGAGCATGTACGGGAGGGATCCATGGGGAGGCCCACTGGAGATAAACACGGCGGACTCGGCCACCGATGACGACCGGAGCCGGAACCTCAACGACCTCG ACCGAGCAGCTCTTTCGAATTCCCGTCCTCTAGACGAGACCCAGCAGAGCTGGCTGCTGGGTCCCACCGAGCAGAAGAAGAAGAAGAGGTATGTCGATCT CGGTTGCATCATCGTCAGCCGCAAGATCTTCATCTGGACTTTGGGAACTTTGCTCGCCGCCGGTCTCCTCACCGGACTCATCATCATCATCGTCAAATAC GCTCCTCGCCACCATCACCCTAAACCCCCGCCTGATAATTACACCCTTGCCCTTCATAAGGCCCTCATGTTCTTCAACGCCCAGAAATCGGGGAAGCTTC CCAAGCATAACAACGTCTCATGGAGAGGGAACTCGTGTATGAACGATGGCAAAGGAGATTCGTCGACTCTGTTTAAGGATCTGGTTGGGGGATACTACGA TGCCGGAGATGCAATCAAGTTCAATTTCCCGAAATCGTTCGCCATGACAATGCTGAGCTGGAGTGTGATCGAGTATAGCGCTAAGTATGAAGCTGTTGGG GAGCTCAATCATATCAAGGACATCATCAAGTGGGGCACTGATTACCTCCTCAAGACCTTTAACCATACCGCCGATACAATTGACAGGATTGTCTCCCAGG TTGGATCAGGGGACACATCAGGGGGAAGCACTACACCGAACGATCATTACTGCTGGACACGGCCCGAGGACATCGACTACGAGAGGCCAGTGACCGAATG TCACACTTGCTCCGATCTCGCTGCGGAAATGGCAGCTGCGCTAGCTTCTGCGTCGATTGTGTTCAAAGACAACAAGGCCTACTCACAGAAGCTTGTCCAC GGTGCTCGGACGCTGTTCAAGTTCTCCAGGGACCAGCGCGGGAGGTACAGTGCAGGTAGTGCGGAAGCTGGCACGTTTTATAACTCCACCAGCTACTGGG ACGAATTCGTCTGGGCTGGAACTTGGTTGTACTATGCAACCGGGAATAACTCGTATCTTTCCTTGGCTACTACTCCCGGTATTGCCAAGCATGCCGGTGC TTTCTGGGGTGGACCCGACTATGGCGTCTTCAGCTGGGACAACAAGCTTACTGGTGCTCAGGTTCTTCTGAGTCGTCTAAGACTGTTCCTGAGCCCGGGC TACCCGTATGAAGAGATATTAAGGACATTCCATAACCAGACTAGCATTGTCATGTGTTCTTACCTTCCGTACTTCTCAAGCTTCAACAGAACCAAAGGTG GGCTGATCCAGTTAAACCATGGGAGGCCACAGCCACTTCAGTATGTAGTCAATTCAGCATTCCTGGCATCTGTGTACGCTGACTATCTCGAAGCTGCCGA TACACCTGGATGGTATTGTGGACCGAACTTCTTCTCCACGAAAATTCTCCGCGATTTTGCCAAGACTCAGATTGATTACGTCCTGGGGAAGAACCCTAGG AAGATGAGCTACGTGGTGGGTTTCGGTAACCATTACCCAAAGCACGTCCACCACAGAGGCGCTTCAGTCCCCCATAACAAGGTGAAGTACAGCTGCAAAG GCGGGTGGAAGTGGAGGGACACCAAGAAGCCAAACCCCAACACCCTCGTAGGAGCCATGGTTGCGGGGCCTGACAGGCATGATGGGTTTAAGGATGTACG AATGAACTACAACTATACCGAGCCAACTCTTGCAGGAAATGCAGGACTAGTTGCTGCCCTCATTGCCTTGTCTGGTGACGGGACGTCTAATATCGATAAG AACACCATATTCTCTGCAGTTCCTCCTATGTTCCCGACTCCTCCTCCTCCTCCAGCACCATGGAAACCATAA
AA sequence Show only first row Show all	>Lus10012162 pacid=23154904 polypeptide=Lus10012162 locus=Lus10012162.g ID=Lus10012162.BGIv1.0 annot-version=v1.0 MSMYGRDPWGGPLEINTADSATDDDRSRNLNDLDRAALSNSRPLDETQQSWLLGPTEQKKKKRYVDLGCIIVSRKIFIWTLGTLLAAGLLTGLIIIIVKY APRHHHPKPPPDNYTLALHKALMFFNAQKSGKLPKHNNVSWRGNSCMNDGKGDSSTLFKDLVGGYYDAGDAIKFNFPKSFAMTMLSWSVIEYSAKYEAVG ELNHIKDIIKWGTDYLLKTFNHTADTIDRIVSQVGSGDTSGGSTTPNDHYCWTRPEDIDYERPVTECHTCSDLAAEMAAALASASIVFKDNKAYSQKLVH GARTLFKFSRDQRGRYSAGSAEAGTFYNSTSYWDEFVWAGTWLYYATGNNSYLSLATTPGIAKHAGAFWGGPDYGVFSWDNKLTGAQVLLSRLRLFLSPG YPYEEILRTFHNQTSIVMCSYLPYFSSFNRTKGGLIQLNHGRPQPLQYVVNSAFLASVYADYLEAADTPGWYCGPNFFSTKILRDFAKTQIDYVLGKNPR KMSYVVGFGNHYPKHVHHRGASVPHNKVKYSCKGGWKWRDTKKPNPNTLVGAMVAGPDRHDGFKDVRMNYNYTEPTLAGNAGLVAALIALSGDGTSNIDK NTIFSAVPPMFPTPPPPPAPWKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	0	1
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10018954 [exp]	2.2	0.9325
AT2G01070			Lung seven transmembrane recep...		Lus10005732 [exp]	2.4	0.9446
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10025293 [exp]	2.4	0.9512
AT1G17270			O-fucosyltransferase family pr...		Lus10037461 [exp]	2.8	0.9518
AT3G06035			Glycoprotein membrane precurso...		Lus10034054 [exp]	2.8	0.9416
AT1G72790			hydroxyproline-rich glycoprote...		Lus10006024 [exp]	3.7	0.9120
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	4.5	0.9201
AT1G13900			Purple acid phosphatases super...		Lus10026652 [exp]	4.9	0.9315
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10028404 [exp]	6.0	0.9010
AT5G03690			Aldolase superfamily protein (...		Lus10035571 [exp]	6.3	0.9245

Compare expression of checked genes

Lus10012162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.