Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02370 333 / 2e-114 SNARE associated Golgi protein family (.1.2) AT1G12450 195 / 3e-60 SNARE associated Golgi protein family (.1) AT4G12000 174 / 4e-52 SNARE associated Golgi protein family (.1) AT4G22850 169 / 2e-50 SNARE associated Golgi protein family (.1.2) AT1G22850 56 / 1e-08 SNARE associated Golgi protein family (.1) AT1G03260 56 / 1e-08 SNARE associated Golgi protein family (.1) AT5G19070 47 / 8e-06 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007583 [exp] 536 / 0 AT2G02370 399 / 2e-140 SNARE associated Golgi protein family (.1.2) Lus10006674 [exp] 186 / 1e-56 AT1G12450 365 / 4e-127 SNARE associated Golgi protein family (.1) Lus10007018 [exp] 185 / 3e-56 AT1G12450 364 / 6e-127 SNARE associated Golgi protein family (.1) Lus10008915 [exp] 181 / 7e-55 AT1G12450 338 / 5e-117 SNARE associated Golgi protein family (.1) Lus10028900 [exp] 162 / 2e-47 AT1G12450 348 / 9e-121 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 59 / 1e-09 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1) Lus10041062 [exp] 54 / 4e-08 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1) Lus10006162 [exp] 54 / 7e-08 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10034028 [exp] 45 / 4e-05 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G078700 [exp] 347 / 9e-120 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.003G151800 [exp] 337 / 7e-116 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.003G117400 [exp] 184 / 5e-56 AT1G12450 343 / 1e-118 SNARE associated Golgi protein family (.1) Potri.001G114600 [exp] 176 / 6e-53 AT1G12450 317 / 3e-108 SNARE associated Golgi protein family (.1) Potri.019G071900 [exp] 54 / 6e-08 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 52 / 2e-07 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10012163 pacid=23155002 polypeptide=Lus10012163 locus=Lus10012163.g ID=Lus10012163.BGIv1.0 annot-version=v1.0 ATGCCAGACACACCGCCTGTGTCGACAAAAGATAGCAGAAATACAGATCACCACACAAGAGAAGATAGTGAATGTGTTAGGCTTGTCATGTCACACGAAC GAATGCCAATATCATCACATGTGATGGAACCTCAAACAACATCAAAGGTCAAGTCTCCCCTCTGGTGGTGCAAAATTCTATCGCTGGCCTTAGTCGCTGG CGTAATCCTCTTCATTTCCATCAAATGGGTGCTCCCGTTTCTCTTCGAGAAGGTTCTCTACCCAATAATGAAATGGGAAGCAACTGCCTTTGGCCGTCCA GTCCTTGCTCTCGTCCTTGTCGCGTCTCTTGCATTGTTCCCCGTCTTCTTAATCCCTTCCGGCCCTTCAATGTGGTTGGCTGGGATGATTTTCGGATATG GCATTGGATTCGTCATTATCATTGCCGGAACAACCATAGGGATGATTCTTCCTTACTTCATCGGGCTGTTGTTCCGTGAACGTATCCATCAATGGCTAGA GAGATGGCCCAAGAACGCTGCAATGCTGAGACTTGCCGCGGAAGGAAGCTGGTTCCACCAATTTCGAGTGGTCGCCCTCTTCAGAGTGTCCCCATTTCCA TACACTATCTTCAACTACGCGATCGTGGTAACCAGTTTGAGGTTCTGGCCTTACATTTGTGGCTCAGTTGCCGGCATGGTGCCGGAAGCTTTCCTTTACA TCTACAGTGGTCGACTAATCAGGACGTTAGCTGAAGTGAACTACGGGAACCACCACTTAACCCCGGTGGAGATGGTGTACAATGTCATCTCGTTCATCGT CGCGATCATCACTGTCGTCGCGTTCACCCTTTATACAAGAAGAGCACTGCATCAGCTCGAGAGCGGAGAGCCAGTTTCGCCTGCAATCGTTAGTTACGAG ATGGGCAAGTTGCCACAGGAAAGATCAAACCATATGGTTCTGTCATCTTTTGTATCATGA
AA sequence Show only first row Show all	>Lus10012163 pacid=23155002 polypeptide=Lus10012163 locus=Lus10012163.g ID=Lus10012163.BGIv1.0 annot-version=v1.0 MPDTPPVSTKDSRNTDHHTREDSECVRLVMSHERMPISSHVMEPQTTSKVKSPLWWCKILSLALVAGVILFISIKWVLPFLFEKVLYPIMKWEATAFGRP VLALVLVASLALFPVFLIPSGPSMWLAGMIFGYGIGFVIIIAGTTIGMILPYFIGLLFRERIHQWLERWPKNAAMLRLAAEGSWFHQFRVVALFRVSPFP YTIFNYAIVVTSLRFWPYICGSVAGMVPEAFLYIYSGRLIRTLAEVNYGNHHLTPVEMVYNVISFIVAIITVVAFTLYTRRALHQLESGEPVSPAIVSYE MGKLPQERSNHMVLSSFVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02370			SNARE associated Golgi protein...		Lus10012163 [exp]	0	1
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	3.2	0.7389
					Lus10023787 [exp]	12.6	0.6687
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019605 [exp]	13.3	0.7042
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10033254 [exp]	13.6	0.6564
AT1G27752			Ubiquitin system component Cue...		Lus10018693 [exp]	14.3	0.6700
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Lus10006874 [exp]	17.7	0.6542
AT1G11340			S-locus lectin protein kinase ...		Lus10018402 [exp]	22.1	0.6848
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	25.0	0.6081
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10040422 [exp]	26.5	0.6307
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10000399 [exp]	31.3	0.6674

Compare expression of checked genes

Lus10012163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.