Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35110 92 / 4e-20 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) AT2G16900 90 / 8e-20 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) AT5G11140 79 / 1e-16 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1) AT2G20960 76 / 2e-14 PEARLI4 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1) AT4G38560 65 / 7e-11 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2) AT4G38550 60 / 2e-09 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1) AT2G20950 59 / 3e-09 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) AT2G16860 46 / 4e-05 GCIP-interacting family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007582 [exp] 783 / 0 AT4G35110 120 / 2e-29 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10026277 [exp] 142 / 5e-37 AT4G35110 187 / 6e-55 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10042396 [exp] 137 / 2e-35 AT4G35110 190 / 6e-56 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10039220 [exp] 44 / 0.0002 AT2G16860 421 / 1e-149 GCIP-interacting family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176100 [exp] 129 / 4e-32 AT2G16900 154 / 3e-42 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Potri.009G136400 [exp] 117 / 3e-28 AT2G16900 132 / 7e-35 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Potri.004G176200 [exp] 45 / 5e-05 AT2G16860 408 / 2e-144 GCIP-interacting family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05278 [flax] [poplar] PEARLI-4 Arabidopsis phospholipase-like protein (PEARLI 4)
Representative CDS sequence Show only first row Show all	>Lus10012164 pacid=23154912 polypeptide=Lus10012164 locus=Lus10012164.g ID=Lus10012164.BGIv1.0 annot-version=v1.0 ATGGCTATTAATGGAAGAGTTCATTCTGAGTGTGTTAATTCTGGGAATCCTTACCATGAGTGTGGAGTTATTTGCTTGGAGAAGATCTCTCAGGGTGTAA CTCGAAATCCTAACAAGAACAAGAAGAAATCAGGTAGTAAGAGTGGTGTTAAGGAAGCTCACCGAGTCAGAAAGACTGATGCACAAGAAAGAAGAGTTGC AAACCCCAACTGTCCAAAATCTGCAAACCCTTTCCATGACTGTGACCAAAACTGCACTGACTACACGCAACCCACTGAAGATGCCAACAACAACCTTCAA GACATTGATGAAGATCAACTTGCTGGATCTTTCATTCTCGGTGCACCGGTGAGCAAGATACGGAGAGAGATCAAGGCTTTATCTCAGCCGAATTCACCTC AAGGTTTGAAACCAGCAGCTTACAGTCTCGGTGTGGTTGCTTCGTCACCAAGATCACCATTGTCCAACACGAACTCTAATAAGAAATCGTCCGTGGCTTC GGACACCAGCAGCAGGTCCACCACCTTATCGACATCCCGTCAGCATTTCGACGAAAGGGGCTCTCGAAGTCATTCTATAGAATCGGTTCTTTCGATGACC ACGGAAGTAACCAACAATGCTTCTTATTCAACAAAGTCTGCAGCTTTATCCAACACAAACCCTAATAAGAAGTCTTTAGATTCAGACACTCATCAACAGT CCGACAAAATTCATTCTCGAAATCTGTCTCGCGAATCTGGAATGATTATGGAAGTAACCAACAATGCTTCTTCTTCGCCAAAGTCTGCAGCTTTACCACA TCAGGAATTCAACCAAATTCGTTCTCGAAACCAGTCTCTCGAATTGGCTCCTTCTTCTCATATGATCATGGAAGTAACCAGCAATGCTTCTTCACAAAAC TTTGATTTCACAATACCAGTTGGGAGATACCACGTCAAATCAGCCATTGCTCCAACCCTGTCCTCGATCCTCGAAAAGTACGGAGACATAGCCGAAAACT GCAACCTCGAATCGACCTCCGTGGTTTCCCACACACTAGAATGCCTCTGTTACCTTCTCCAGGAGCTGCTGCAGTCCCCTTTCAAATCGAAATCGAAATC CAAGGAACTGCTGGCAGTCTTCAAGGACCTCGAATCAGCAGGGATCCGCACGAGCTGGCTTCGAGACGAGGTAAAAATCGTCAACAGTCAGAGACAATCT GAGTGTGATCTTGCTATTGAGTTGGTGAAGAGGGAGCTTGAGCCCCTGATGGAGGATCTGGCTTCTAAACAGCAGGCTATTGCAGAAGTTGCGGGGAAAG TTGAAAAGTTGAAGGTTGGTTTAGAACAGTTGGAAGGTGAATCCTTGAGGCTCAAGGAATCTGCTTCTTTTAGTTGGTTGTTGGTTGAGAAGTTTCATGG CTCCAAATCTTTGGGAGATGCTGTCTTGTGA
AA sequence Show only first row Show all	>Lus10012164 pacid=23154912 polypeptide=Lus10012164 locus=Lus10012164.g ID=Lus10012164.BGIv1.0 annot-version=v1.0 MAINGRVHSECVNSGNPYHECGVICLEKISQGVTRNPNKNKKKSGSKSGVKEAHRVRKTDAQERRVANPNCPKSANPFHDCDQNCTDYTQPTEDANNNLQ DIDEDQLAGSFILGAPVSKIRREIKALSQPNSPQGLKPAAYSLGVVASSPRSPLSNTNSNKKSSVASDTSSRSTTLSTSRQHFDERGSRSHSIESVLSMT TEVTNNASYSTKSAALSNTNPNKKSLDSDTHQQSDKIHSRNLSRESGMIMEVTNNASSSPKSAALPHQEFNQIRSRNQSLELAPSSHMIMEVTSNASSQN FDFTIPVGRYHVKSAIAPTLSSILEKYGDIAENCNLESTSVVSHTLECLCYLLQELLQSPFKSKSKSKELLAVFKDLESAGIRTSWLRDEVKIVNSQRQS ECDLAIELVKRELEPLMEDLASKQQAIAEVAGKVEKLKVGLEQLEGESLRLKESASFSWLLVEKFHGSKSLGDAVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16900			Arabidopsis phospholipase-like...		Lus10012164 [exp]	0	1
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025784 [exp]	3.2	0.8095
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10013186 [exp]	3.3	0.8467
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028075 [exp]	4.0	0.8271
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10004403 [exp]	8.7	0.8038
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10023073 [exp]	10.6	0.8102
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10036260 [exp]	14.0	0.8174
AT2G20740			Tetraspanin family protein (.1...		Lus10039817 [exp]	16.1	0.8144
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	17.5	0.8038
AT1G08315			ARM repeat superfamily protein...		Lus10024145 [exp]	18.0	0.8018
AT5G03990			unknown protein		Lus10016362 [exp]	19.8	0.8104

Compare expression of checked genes

Lus10012164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.