Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38710 150 / 4e-41 glycine-rich protein (.1.2) AT3G26400 55 / 5e-08 EIF4B1 eukaryotic translation initiation factor 4B1 (.1) AT1G13020 50 / 1e-06 EIF4B2 eukaryotic initiation factor 4B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007580 [exp] 123 / 1e-34 ND 37 / 0.001 Lus10007581 [exp] 103 / 4e-27 ND / Lus10036874 [exp] 70 / 9e-13 AT3G26400 355 / 4e-117 eukaryotic translation initiation factor 4B1 (.1) Lus10011412 [exp] 67 / 9e-12 AT3G26400 387 / 3e-129 eukaryotic translation initiation factor 4B1 (.1) Lus10006469 [exp] 65 / 2e-11 AT3G26400 205 / 1e-61 eukaryotic translation initiation factor 4B1 (.1) Lus10006224 [exp] 53 / 3e-07 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G130200 [exp] 179 / 1e-52 AT4G38710 192 / 1e-56 glycine-rich protein (.1.2) Potri.004G169100 [exp] 139 / 9e-38 AT4G38710 149 / 1e-40 glycine-rich protein (.1.2) Potri.010G048200 [exp] 62 / 3e-10 AT3G26400 349 / 1e-114 eukaryotic translation initiation factor 4B1 (.1) Potri.014G123100 [exp] 47 / 1e-05 AT3G26400 55 / 3e-08 eukaryotic translation initiation factor 4B1 (.1) Potri.008G185400 [exp] 47 / 2e-05 AT3G26400 325 / 5e-105 eukaryotic translation initiation factor 4B1 (.1) Potri.002G198700 [exp] 44 / 8e-05 AT3G26400 50 / 1e-06 eukaryotic translation initiation factor 4B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06273 [flax] [poplar] eIF-4B Plant specific eukaryotic initiation factor 4B
Representative CDS sequence Show only first row Show all	>Lus10012166 pacid=23154952 polypeptide=Lus10012166 locus=Lus10012166.g ID=Lus10012166.BGIv1.0 annot-version=v1.0 ATGGCGGCAACTGTTTCATCTCCATGGTCCAAGCCCGGCGCGTGGGCGCTAGACGCCAAGGAGCACGAGGCCGAGCTCCAGCAGCAGGATTCACAACCGA AAGAAGAACCCGCCGATTTCCCATCCCTAGCCGCCGCCGCAGCTGACGCCAAGACGGCGACGAAGAAGAAGAAGAAGAACAAAGGGACAACGATTTCTCT GTCCATGCTCCAGTCCGGAACGTACACTCGGCCCGAATTGAACACCGCCTCGCTTCCGATAGCGCAGCCGAGGGAGCCGTTGGGACCGTCGAGGGCTGAC GAGGCGGACGACTGGTCGAAAGGGAAGAGATCGACGATGCCATCCGGCGGCGGAGGAGGGGATGGATTTGAGAGGAGAGGGAGGGAGAGAGGTTCTTCGT TCTTCGAAGGTCATTCCAAGGCTGATGAGTCCGATAGCTGGGTGTCGAATAGGGCTCCTCCAGCTTTTAGTGCTGAGCCAAGGAGATTCGGTGGTGCTGG TGCTGGATATGAGAGTTTGGGGAGCTTTGATTCGCTTTCTAGGGATCGATATGGTCCAAATAATGGCGGTGGTAATGCTGATTCGGAGACATGGGGGAGG AAGAGGGAGGAGAGTAATGGAGTTGGCAATGTAGTAGGTTCTGCTAGGCCGAGGCTGGTACTGCAGCCACGTACAACTCCTGTTCCGGTTCTCGTTGTTG CAAGCAATGAGAATGGGAGCACGGAGAATGGTGGGAGCAAATCGCCGGTGGTGGTGGTGCCGAGGCCAAAGGGATCGAATCCGTTTGGGGCAGCTAGGCC GAGGGAGGAGGTGTTGGCTGAAAAGGGGATGGATTGGAAGGAGATTGATGAGAAATTGGAGACAGTGAAGATGAAAGGTGGAGATGATGATAAAGTGGAA AGAGCCGATAAGGGTTTGAGATGGAGCTTTGGCCGTGTTGGTGCTGAAGAAGTTGTGGAGAAGAGCTGGAGAAAGGCTGGTGATTCTGTCGATGAAAGTT CTGAATCTGTCGAGAATGGACATGCTGATTCCACCTCGCACGTCGAAGCTGCTAACCCGGATTATAACGGCGAGGCTCCTGCTGCTGATGTGGAGAATTG A
AA sequence Show only first row Show all	>Lus10012166 pacid=23154952 polypeptide=Lus10012166 locus=Lus10012166.g ID=Lus10012166.BGIv1.0 annot-version=v1.0 MAATVSSPWSKPGAWALDAKEHEAELQQQDSQPKEEPADFPSLAAAAADAKTATKKKKKNKGTTISLSMLQSGTYTRPELNTASLPIAQPREPLGPSRAD EADDWSKGKRSTMPSGGGGGDGFERRGRERGSSFFEGHSKADESDSWVSNRAPPAFSAEPRRFGGAGAGYESLGSFDSLSRDRYGPNNGGGNADSETWGR KREESNGVGNVVGSARPRLVLQPRTTPVPVLVVASNENGSTENGGSKSPVVVVPRPKGSNPFGAARPREEVLAEKGMDWKEIDEKLETVKMKGGDDDKVE RADKGLRWSFGRVGAEEVVEKSWRKAGDSVDESSESVENGHADSTSHVEAANPDYNGEAPAADVEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38710			glycine-rich protein (.1.2)		Lus10012166 [exp]	0	1
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10028449 [exp]	1.4	0.8476
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030889 [exp]	3.0	0.8348
AT4G39840			unknown protein		Lus10024058 [exp]	5.3	0.8216
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10016414 [exp]	6.5	0.8120
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10025384 [exp]	11.8	0.8379
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10033445 [exp]	11.8	0.7600
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	15.1	0.8151
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10008922 [exp]	17.6	0.8153
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10026404 [exp]	18.7	0.8085
					Lus10007581 [exp]	20.8	0.8116

Compare expression of checked genes

Lus10012166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.