Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38760 1605 / 0 Protein of unknown function (DUF3414) (.1) AT4G10845 46 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007578 [exp] 3374 / 0 AT4G38760 1812 / 0.0 Protein of unknown function (DUF3414) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G130000 [exp] 2100 / 0 AT4G38760 1972 / 0.0 Protein of unknown function (DUF3414) (.1) Potri.004G168700 [exp] 491 / 5e-152 AT4G38760 498 / 7e-155 Protein of unknown function (DUF3414) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012168 pacid=23154928 polypeptide=Lus10012168 locus=Lus10012168.g ID=Lus10012168.BGIv1.0 annot-version=v1.0 ATGTCAAGTAATCAGAAGTCAGTCGATTCATCACTCTGGTGGGACTCTTTCTCCTCGCTTCTCGCCGAACTGGAGAACGCCTCGCCCTCCTCCGACCTTC CTCCGGACCTGGCGACGAAGTTGAAGCAGAATCATGGCTGGTTCGTGGAAACGGTGGCTCGTTTTAAGCCGCCGAATTCCGGTTCGAAAGAGGCTCTGAA CTCCGAGAAGTTGAAAGTTGGGGATCATGAGCTGACTGTTAAGCCTCAGCTGAGAGAGAAAGCTCTCCGTATTAGCTCTTGTGCGTCGTTGGATGAAGTG CAGTCCTATATTCTCGTGGAGAGGTCTCTCGAACACAATGGCTTATCGATCGATTCCATTGCTGAAGAGTATCTCCATGCGGTGTTGCTTGATTACTACA TTGAGCGACAATGCTTACTCAAATGTACTAGGCAAATCCTGATGTATGCGTTGTTTATTGGAATTAGGTCCAAAGGAGAGAATCTTGTTAAGGACGAGAC ATTGAAGCTAATTTCTGATGGATTGGAGAATAAATTGGTCTCTGTTCTTCAGGACCTTTTATCTGTCAGCCATCCTGTCCAGATGGATGTTGACCTTGTC AGTTTGTGGGCTGAAGAGATACTAATTGAAGACAATTTGGTCTTGGACATTCTTTTCCTGATATATTATGAGTCACTCTGCGTATGTAATGGTGAGATGT GGAGAAAGATTTGTTCACTATACAAGGGGATTATATCAGGCACTTATAACTTCGGAAAGTTAGAAATATCAACTGAAGCAGGTAAATCTTGTTATCAAAC CAAAGTTCAGCTTTTACTCATCCTTATAGAGACTCTGGATCTTGAACACCTTCTCCAGCTAGTTCACGATGGAACTCCTTTCAGGAATGGAGTGTCCTCG TTTACTTACGCTGATATTCAACAAATGGATGCATTAATATCTGATCTTACTGCTACTGAAGAGAAAGAAGCGGCAGGGCTACTTTTCGCATGGGCTGTGT TTCTCTGTCTAGTTAGTTCCCTTCCAGTAAAAGAGCAATCAGATGTGGACATCGATCATGTTAGTTATGTACGGCAAGCATTTGATGGTGAAGCTTTAAG CTACTTTCTTGAGATTACTGGAAGTGACATGTTGCAGGATTCAGATGGACCCGTGGCTGGGTACCGGAGTGTTCTGCGAACAACTATTTCCGCGTTCATT GCATCATATGAAATTAATATTCAGTTGGAGAATGGTAACCTAAGTCTGATAGTGGATATTCTTTGTAAGATTTATCGTGGAGAGGAGTCGCTTTGTGTTC AGTTCTGGGACAGAGAAAGTTTTATTGATGGTCCACTCAGGTGCCTTTTGTGCAACTTAGAAGGCGAATTTCCATTTAGGACTATTGAACTCATTCGACT TTTATCATCCCTCTCAGAAGGAAGCTGGCCTGCAGAATGTGTGTATAATTTCCTTGATAAATCTGTTGGCATATCATCTTTGTTTGAAGTTACTAGTGAG TTCATTGTGGACAGAGCCTCACAGATAGTTGAAACACAACAGCCATTGTTTATTCCTGGAATTGAAGGGTTGGTTGTGCCCTCAAAGACTCGTGGGCAGG TTCTGAAAGTTGTGGATACTAAAACTGCCCTAGTACGCTGGGAGTATACGCAATCAGGATTGCTTATCTTGCTTCTGCGCCTTGCACAATCACTGCAAAT TCAGAGCAACAAAGAACGATTTCTCATTCTTGACCTTCTTAGACGAATGGTGTCCTTTAACACTGGGGTGCCCTCCGTTGCTTATGGGACTTACGTGCAG GCTGTAACATTTTCTTTAATGGACGTTGGAAATTCATTATATCAGACAGCAGCTAGACTAAGTGGGCAGGTGGAAAAGAATTCGTGGATGGTTGAAATCA TCTGTGCAGTTATAAGAAATTCATCTACCAGTGCTGAAGGTGCTGTACAGATGTCAATTGGAGTTGGTATTTTGGCAGAGATGATTAAGGGTGCACCAAC TCTTGCTGCTTTGACTGTAAAGGCAAATATATTTGAGATGGCTTCAAGGACTAGTGTGTTTGAGTTGGGGTATAACAGCTCATCAAGTGGGTCTTGGTTG CCTTCTGGAAAGCTTGCGAAAATGCTTCAAATTGATTCTGAACATAACGATTATGATGTCCCATTGGTTATATCGGTTCTTGAGTTTACTATTGAGCTGG TGGAGAAGAGGGTAGAAAACGATCTTGTGCTTGCATTAGTAGCGTTCTGTCTACAGTATGTTCTAGTTAATCATGACTCTTGGAAGTACAAGGTGAAACA GGTTCAATGGAGAGCAACATTGAAGGTCTTGGACTTGACAAAAACATGCATCACAGCAGTCCCATACCTTGAAAAGTTGGGCATTGTCATCCGTGATATG CTGCTTTGGGACTCTTCGATTCACAGTTCTATCCTTCGGCTTGTCTGTAATACTAAGGAAACATTGGAGAAACTCTACGTCTGTCGGCTCTTTGAATTGA ACGAGATTGAAGGATTTCAGCTTGCTATAGGTTCTGCTTTAGATGTTCTGCATTTAATGTTGTATGAATTTTCGAAGGACATTTCAAGCAGTATTCCTTT ATTTCATCAAGTAGTGCTTTCATCTGCTGGAAAACAAGTTTCTGTTGCTGCTGCTGTTATATCCTTGTTATCTTACGCCCAGAATCCGTCAATACAAGCC GGCGCTGCCAGAATGCTAGCGATGCTGTTGATTACAACTGAAAATTTACGACCACATTTGTCTGGTAATGTGTGGTTTATTCTCGATGATCATCAGATCG CAGATTTGAAACAAACTTTTAGAAGTGGCCTCTCTGAGCTGTTGGAGGAGAATGAAGATCTGTTCATTTACTTTATGAATGTGCTCACTTCTGCTGCATG TTACAAGCCTGCTTTTCTTGTTGCAATGTTCTCACCCACTGACACCAAAGAAGTCAAGTTAGGTGATAGCATTGAGGCAAAGGCTCCAACCGGGAAAACT TCAAATGAAGCAGCAGAGTCCAAGAAACCAAGTTTAGCCGATGGGTTAATGACATGTGTGGAAAGATCTAATGATCTCATCATGAGTAATCCTCGTGTGC TGCTGAGTTTTTTGCATTTCATGAAGGCCCTGTGGCAAGGAGGTGCTCAGTATATTAGTATTATGGATTCTTTGAAAAATTCTGGGAAGTTCTGGACGCA CTTGTGCAGTAGCATCTCATCAGTTTCTGCCTCCAAAGACGTTTCTCTTGAAAAATTGTCTGCAACCAATGCTCAAAGCTTAGCATATAAATACAAATGT CAGTCTGCAATTTTGGAATTAATGGCTTGTGACATGTTTCTGGATAAGAAGTTGCTACACGCTGAGTCGCTTTTGAAGGAAGCTTCTCAAAAAGATAAGA GGAATGAAACTGTACTAAGCTCTGAAATATCAAACTTAAATCGTGTCGGGGCAAGAGATACATGGTCAAGTTGGTGTGAGAAATCTGTACTTGGCTCCCT GATCAAGACATACACTTCTTGTGAATATGATAATGAGATCTTTTATCACACAAAGGTCGCATCCAGCTTGTTTAGTGTCCATGCAATGGTGAAATTAGCA AAAGGGGAAACTGGTAGCTTCTCTGTTCCCTTGCTTGAGAAGATTGGTTGCGACTTCAAAAGTCTATGCGGTCAGCCTGCATTTTCTGATTTAATGGTTC AATATTCACACCATGGTTACAGCGAAGGAGACGAACTGAACATTTTAATCCTCAATGATCTTTACTATCATCTTCACGGAGAACTGGAAGGCCGAACAAT AGGACCGGGGCCATTCAAAGAGCTTTCACAGTATCTGGCTCGGTCAAATTCTTTGCAGAGCTATAAAAGGGAGTACGATAATGAACTTCTTGCAAACACG AAAGAGGTCTATTTGTATGACGTTGAATGCATAAGGAAAGATTCGGGATTAGAGTTGTGGGATTACACGAGTTGGAAAGCCTCCAAGGGAGTTGCAGATG CTATGCTGGACTCCATGGAGGATGCAAATTCAATGCTGTTGGTTCTAGGTTCGAAGCTCTCTGCACTCCGTGAGTTGACAACTGTCTTCACCATCTTTGT CGACAATTCATTGAAGGAGGATAATCGTGGAACATTTTCCAACCAACTATGTGTTTCTTGCATCGACCACATCTGCAAACATGTCCATGCATCTGTCTCA TTAGTAGCTTCGAGTGAGGATTCATCTCGGGATGTTCTTGCTCTCGTTGAAGCACAAGCTGAATTGCTACTCTGCCTCGTAAGATTCCTCAAGAGCAGGT TGCCTCCTTCTACTTGTATACTTGTCTTGAAAACCTCAGCTTCCGGCCTTAAAATTCTCCTTGATTCCAAGTCATATCTCGCCTCACCTACAACGACTAC GACCCTTCTAGTTATGGTCCTTCTATCAGCCCTCGAATTCTGCAAAAATTCCGATACCGGAACGGAAACCGTCGGACTTGCAAACATTTGTATGAGGCTG TTACCTATTTTATGCAAGTGCATTACTGGCGCCGATCATTCTTCCATCAGTCTGACTACCAGTGACCTGATATTGAGATGTTTCTTGACCCCCAACACTT GGCTTCCGCTTATTCGAGAACATCTCCAGCTTCGTCACATCATCCTAGAGCTGCAAGATGGGAAGTCTGCTTCATCAGCCTTACCAACAAGGTTAAGGTT TCTTCTCACTCTTGCCCGGGTCAGAGGTGGTGCCGAGATGCTCCTTGCTTCCGGCTTCATATCATCTCTTAGAGTACTGTTCACTAACTTCTGTGATATC CAGCCTATAGTGAAATCGTCTGACAAAACCGAAAAGCCCCAAGATATCTGGGGTCTTGGTCTGGCTGTCGTCACAGCTATGATTCATTCTTTGGGGGACA GCGCTGCTTGCAACGATATCGTCAACGACTTAGTACCCTACATTTTCTCCGAGAAGGCTTATGTGATCTCTCACTATCTCAGCGCACCGGAAAATCCCGA CACACATGGCAAGAAGAAAGCTCGCGAACAAAATGCACCTACGTCTCTTCGTGCTCTTAAGGAGACAGAGCATACCCTTACATTGATGTGCATTCTCGCG AAACGGAGATGTTCGTGGGTTAGGGCCACAAATGATGTGGATTCGCATATCCGGGAGAGGAGTATTCATCTCTTAGCATTCATTAGCCGAGGAGGTCGCC AGCCTGGCGAGTCCACCAGCAAAAGCTCTCTGCTTGCTTGTCCTCCTATGCTGAAGCAAGACTTCGAGTATTCAGAGAAAGCATCGTTTGTAAACAGCAA GCATGGCTGGTTTGCTCTTTCGCCTTGTTGTTGTGCGACGAGTTCCAGATTACATGCTGCTTCCTCGGAGACCGGTACCAGCACAGTTCTCATAGTAAAA GGTCATACCTTTGGTACAATGAGCGGTCCTGCTCCGACATTTTTCTCGGATTTAGTAGCTGTCCAGATGTACAGGGTTGCATTTCTTGTATTGAAGTTCC TCTGCATTGAGGCAAAGGGTGCTGCTGAAAGGTCAGAAGAGCTCGGTTTCGTCGATCTTGCTCACATACCTGAACTCCCAATGCCAGACATATTACACGG CTTGCAGGACCAAGCTGTCGCGATAATCTGCGACATATGTGAGAAAAAGACTGCCGATCCCGAAATCCAATCCATCTCCTTGATCCTAATTCAAATCCTG GAGATGGCGTTGTACTTGGAGTTATCAGTTCTCCAGATCTGTGGAATCAGACCCGTATTAGGACGAATGGACGATTTCTCCAAAGGAGCTAAAATGCTGT TCAAAGTGATGGAAGAGCAAGCTTTTCTGAAACCATCAACGAAATCGCTGAAGCAAATCGTATCGCTGGTATACCCGGGATTGCCGTAG
AA sequence Show only first row Show all	>Lus10012168 pacid=23154928 polypeptide=Lus10012168 locus=Lus10012168.g ID=Lus10012168.BGIv1.0 annot-version=v1.0 MSSNQKSVDSSLWWDSFSSLLAELENASPSSDLPPDLATKLKQNHGWFVETVARFKPPNSGSKEALNSEKLKVGDHELTVKPQLREKALRISSCASLDEV QSYILVERSLEHNGLSIDSIAEEYLHAVLLDYYIERQCLLKCTRQILMYALFIGIRSKGENLVKDETLKLISDGLENKLVSVLQDLLSVSHPVQMDVDLV SLWAEEILIEDNLVLDILFLIYYESLCVCNGEMWRKICSLYKGIISGTYNFGKLEISTEAGKSCYQTKVQLLLILIETLDLEHLLQLVHDGTPFRNGVSS FTYADIQQMDALISDLTATEEKEAAGLLFAWAVFLCLVSSLPVKEQSDVDIDHVSYVRQAFDGEALSYFLEITGSDMLQDSDGPVAGYRSVLRTTISAFI ASYEINIQLENGNLSLIVDILCKIYRGEESLCVQFWDRESFIDGPLRCLLCNLEGEFPFRTIELIRLLSSLSEGSWPAECVYNFLDKSVGISSLFEVTSE FIVDRASQIVETQQPLFIPGIEGLVVPSKTRGQVLKVVDTKTALVRWEYTQSGLLILLLRLAQSLQIQSNKERFLILDLLRRMVSFNTGVPSVAYGTYVQ AVTFSLMDVGNSLYQTAARLSGQVEKNSWMVEIICAVIRNSSTSAEGAVQMSIGVGILAEMIKGAPTLAALTVKANIFEMASRTSVFELGYNSSSSGSWL PSGKLAKMLQIDSEHNDYDVPLVISVLEFTIELVEKRVENDLVLALVAFCLQYVLVNHDSWKYKVKQVQWRATLKVLDLTKTCITAVPYLEKLGIVIRDM LLWDSSIHSSILRLVCNTKETLEKLYVCRLFELNEIEGFQLAIGSALDVLHLMLYEFSKDISSSIPLFHQVVLSSAGKQVSVAAAVISLLSYAQNPSIQA GAARMLAMLLITTENLRPHLSGNVWFILDDHQIADLKQTFRSGLSELLEENEDLFIYFMNVLTSAACYKPAFLVAMFSPTDTKEVKLGDSIEAKAPTGKT SNEAAESKKPSLADGLMTCVERSNDLIMSNPRVLLSFLHFMKALWQGGAQYISIMDSLKNSGKFWTHLCSSISSVSASKDVSLEKLSATNAQSLAYKYKC QSAILELMACDMFLDKKLLHAESLLKEASQKDKRNETVLSSEISNLNRVGARDTWSSWCEKSVLGSLIKTYTSCEYDNEIFYHTKVASSLFSVHAMVKLA KGETGSFSVPLLEKIGCDFKSLCGQPAFSDLMVQYSHHGYSEGDELNILILNDLYYHLHGELEGRTIGPGPFKELSQYLARSNSLQSYKREYDNELLANT KEVYLYDVECIRKDSGLELWDYTSWKASKGVADAMLDSMEDANSMLLVLGSKLSALRELTTVFTIFVDNSLKEDNRGTFSNQLCVSCIDHICKHVHASVS LVASSEDSSRDVLALVEAQAELLLCLVRFLKSRLPPSTCILVLKTSASGLKILLDSKSYLASPTTTTTLLVMVLLSALEFCKNSDTGTETVGLANICMRL LPILCKCITGADHSSISLTTSDLILRCFLTPNTWLPLIREHLQLRHIILELQDGKSASSALPTRLRFLLTLARVRGGAEMLLASGFISSLRVLFTNFCDI QPIVKSSDKTEKPQDIWGLGLAVVTAMIHSLGDSAACNDIVNDLVPYIFSEKAYVISHYLSAPENPDTHGKKKAREQNAPTSLRALKETEHTLTLMCILA KRRCSWVRATNDVDSHIRERSIHLLAFISRGGRQPGESTSKSSLLACPPMLKQDFEYSEKASFVNSKHGWFALSPCCCATSSRLHAASSETGTSTVLIVK GHTFGTMSGPAPTFFSDLVAVQMYRVAFLVLKFLCIEAKGAAERSEELGFVDLAHIPELPMPDILHGLQDQAVAIICDICEKKTADPEIQSISLILIQIL EMALYLELSVLQICGIRPVLGRMDDFSKGAKMLFKVMEEQAFLKPSTKSLKQIVSLVYPGLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38760			Protein of unknown function (D...		Lus10012168 [exp]	0	1
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	2.2	0.9576
AT3G10650		AtNUP1	unknown protein		Lus10034137 [exp]	4.2	0.9515
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	4.7	0.9560
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10041483 [exp]	4.9	0.9246
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10025508 [exp]	4.9	0.9411
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	5.5	0.9380
AT1G26170			ARM repeat superfamily protein...		Lus10031911 [exp]	5.7	0.9487
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10013744 [exp]	8.9	0.9403
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	9.2	0.9348
AT1G58060			RNA helicase family protein (....		Lus10020816 [exp]	10.2	0.9331

Compare expression of checked genes

Lus10012168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.