Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16595 267 / 3e-90 Translocon-associated protein (TRAP), alpha subunit (.1) AT2G21160 244 / 6e-81 Translocon-associated protein (TRAP), alpha subunit (.1), Translocon-associated protein (TRAP), alpha subunit (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007577 [exp] 451 / 1e-162 AT2G16595 276 / 1e-93 Translocon-associated protein (TRAP), alpha subunit (.1) Lus10026282 [exp] 342 / 1e-119 AT2G16595 254 / 5e-85 Translocon-associated protein (TRAP), alpha subunit (.1) Lus10042391 [exp] 243 / 7e-80 AT2G16595 182 / 2e-56 Translocon-associated protein (TRAP), alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G168500 [exp] 361 / 3e-127 AT2G16595 259 / 4e-87 Translocon-associated protein (TRAP), alpha subunit (.1) Potri.009G129800 [exp] 334 / 2e-116 AT2G21160 245 / 2e-81 Translocon-associated protein (TRAP), alpha subunit (.1), Translocon-associated protein (TRAP), alpha subunit (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03896 [flax] [poplar] TRAP_alpha Translocon-associated protein (TRAP), alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10012169 pacid=23154906 polypeptide=Lus10012169 locus=Lus10012169.g ID=Lus10012169.BGIv1.0 annot-version=v1.0 ATGAACACTCTTAGGGTTTTCTTCCTCGCTCTCCTCCTCCTCGCCTCTCCTCTTCTCCAAGTTGCTAGATGCGATGGAGATGCAGAGGCGGAGGCAGCTG CTGAAACAGTGAATTCTGCTGAAGACGCAACAGATCTTGGGATTGTTGGTTCCGAAGCTGATGTTCAGGATTTTGGCGATGAGAATTTTGCTCCAGCTCC TGGGATTGAAACTGTCTGTCTCTTCCCCAAGAACAGTGCCAAGACCATACCAGCTGGACAAGAGTCGGAGCTTCTCGTGGGAGTGAAGAATGACGGAGAA TCTAGTATTAATGTTATTGCAATCAAGGCTAGTGTTCATCTTCCATTTGATCACCGTCTCCTTGTTCAGAATCTGACCGCTCAGGGATTCAACAACGCAA CTGTTCCGGCCTCGGCACAAGCTACCTACCCGTACATTTTTGCCGTGAGCAAGTTCCTCCAGGCTGGAACCTTCGATCTCGTTGGGACCATCATTTATGA AATAGACCAGCAACCTTACCAGAGCACATTCTACAATGGCACTGTAGAAGTCATCGAAGTTGGTGGTCTCCTCAGCATGGAGTCTGTTCTTCTCATTACT CTCGGCACTGCTCTTGTTGTACTCTTTGGCATTTGGATTCAATCTCAAATAAAGAATCTCTCTAAGAAAACCAAGAGAGCCCCCAAGGTTGAAGTCGGTT CTGGGACCAGAGATGCCTCAATGGACGAATGGCTCGAGGGCACTGCATACACTCAGTCCAACAAGCAAAAGAAGAAGAAATAG
AA sequence Show only first row Show all	>Lus10012169 pacid=23154906 polypeptide=Lus10012169 locus=Lus10012169.g ID=Lus10012169.BGIv1.0 annot-version=v1.0 MNTLRVFFLALLLLASPLLQVARCDGDAEAEAAAETVNSAEDATDLGIVGSEADVQDFGDENFAPAPGIETVCLFPKNSAKTIPAGQESELLVGVKNDGE SSINVIAIKASVHLPFDHRLLVQNLTAQGFNNATVPASAQATYPYIFAVSKFLQAGTFDLVGTIIYEIDQQPYQSTFYNGTVEVIEVGGLLSMESVLLIT LGTALVVLFGIWIQSQIKNLSKKTKRAPKVEVGSGTRDASMDEWLEGTAYTQSNKQKKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16595			Translocon-associated protein ...		Lus10012169 [exp]	0	1
AT5G43960			Nuclear transport factor 2 (NT...		Lus10022873 [exp]	1.0	0.9086
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10008407 [exp]	3.5	0.8567
AT2G03640			Nuclear transport factor 2 (NT...		Lus10037066 [exp]	4.5	0.8693
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10022556 [exp]	11.0	0.8256
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	11.3	0.8471
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10014853 [exp]	13.0	0.8206
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031410 [exp]	13.4	0.8264
AT1G75990			PAM domain (PCI/PINT associate...		Lus10025072 [exp]	14.4	0.8171
AT5G64970			Mitochondrial substrate carrie...		Lus10014334 [exp]	15.0	0.8317
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10037722 [exp]	16.1	0.8093

Compare expression of checked genes

Lus10012169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.