Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21150 473 / 6e-169 XCT XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007576 [exp] 552 / 0 AT2G21150 522 / 0.0 XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1) Lus10007574 [exp] 97 / 6e-22 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10012172 [exp] 76 / 9e-15 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G129700 [exp] 495 / 1e-177 AT2G21150 507 / 0.0 XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1) Potri.004G168400 [exp] 491 / 6e-176 AT2G21150 525 / 0.0 XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1) Potri.015G102501 [exp] 39 / 0.0005 AT3G48770 63 / 7e-13 DNA binding;ATP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04921 [flax] [poplar] XAP5 XAP5, circadian clock regulator
Representative CDS sequence Show only first row Show all	>Lus10012170 pacid=23154900 polypeptide=Lus10012170 locus=Lus10012170.g ID=Lus10012170.BGIv1.0 annot-version=v1.0 ATGGCGGGCATGGGTGACGGCTACGTCGGCACGGCGCAGGACGCCGTGAGGATCCGCCGCCTGGAGAAACAGCGAGAAGCGGAGCGCCGGAAAATCGAGG AGCTGAAGACCAAGTCCGCCTCTGGTAATGGCCAGACTGGGCTTCTCCAGTTCGGGTCAAGTACATCGGAGATTCTGGAGACGGCGTTTAAGAAGGAGAC TGTTGGGTTGGTTACGAGGGAGCAGTATGTAGAGAAGAGAGTTACTATACAGAATAAGATTGAAGAAGAGGAGAAGGAGAAGCTTCAGAAGCTACGACAA GAGGAGGAGGAAGCGCAGCTAGCTAAACGGAAGAAGAGGAAGATTAAAGGGAATTCGAAGCTGTCTTTCTCTGATGATTTCGAGGATGGAGTGGAAGAGG AAGATGATGAAAACGAAAATCCGAGTATGAATAAGTTGGCTCGTGGAAAGTTTGGCAAAGATCCCACTGTAGAAACAAGCTTTTTGCCTGACAGTGAGAG GGAGGCTGAGGAGCAAGCTGAGCGTGAAAGGCTGCGGAAACAATGGGTTCGCGAGCAGGAGCAGATCAAAAATGAAGCCCTTCAAATTACTTACAGTTAC TGGGATGGGACAGGTCATCGAAGGACAATCCAGTGCCGCAAAGGTGATAGCATAGGCGAGTTTTTGCGGACTGTCCAGCAGCAACTTGCACCCGAGTTCA GAGAAATCAGAACAACTTCTGTTGAGAATTTACTTTACGTGAAAGAAGATCTTATTATTCCACATCAACACAGCTTCTACGATCTCATAGTCAACAAAGC AAGAGGCAAAAGTGGACCGCTTTTCCACTTCGATGTCCACGAGGATGTGCGAACCATTGCTGATGCAACCATTGAAAAGGATGAGTCCCATGCTGGTAAA GTTGTGGAGAGGCACTGGTATGACAAGAACAAGCATATATTCCCTGCATCAAGATGGGAGATATATGACCCTTCTAGGAAGTGGGAGCGATACACCATCC ATGGAGATTAA
AA sequence Show only first row Show all	>Lus10012170 pacid=23154900 polypeptide=Lus10012170 locus=Lus10012170.g ID=Lus10012170.BGIv1.0 annot-version=v1.0 MAGMGDGYVGTAQDAVRIRRLEKQREAERRKIEELKTKSASGNGQTGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVTIQNKIEEEEKEKLQKLRQ EEEEAQLAKRKKRKIKGNSKLSFSDDFEDGVEEEDDENENPSMNKLARGKFGKDPTVETSFLPDSEREAEEQAERERLRKQWVREQEQIKNEALQITYSY WDGTGHRRTIQCRKGDSIGEFLRTVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYDLIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGK VVERHWYDKNKHIFPASRWEIYDPSRKWERYTIHGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	0	1
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10015220 [exp]	1.0	0.9375
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10012566 [exp]	2.6	0.9248
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	3.0	0.9325
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	3.5	0.9360
AT3G60510			ATP-dependent caseinolytic (Cl...		Lus10028182 [exp]	4.0	0.9285
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	7.3	0.9256
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10001249 [exp]	7.4	0.9178
					Lus10015592 [exp]	8.7	0.9032
AT4G27120			unknown protein		Lus10011161 [exp]	8.7	0.9259
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10025435 [exp]	9.2	0.9048

Compare expression of checked genes

Lus10012170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.