Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21170 467 / 3e-167 PDTPI, TIM PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) AT3G55440 318 / 1e-109 CYTOTPI, ATCTIMC, TPI CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007575 [exp] 545 / 0 AT2G21170 466 / 2e-167 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Lus10040807 [exp] 295 / 3e-100 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10016538 [exp] 295 / 3e-100 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10005461 [exp] 291 / 1e-98 AT3G55440 454 / 4e-164 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10004963 [exp] 266 / 3e-86 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G168000 [exp] 498 / 2e-179 AT2G21170 489 / 5e-176 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Potri.009G129500 [exp] 488 / 9e-176 AT2G21170 479 / 8e-172 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Potri.009G031200 [exp] 309 / 6e-106 AT3G55440 358 / 4e-126 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.001G240300 [exp] 303 / 2e-103 AT3G55440 377 / 1e-133 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.010G203500 [exp] 288 / 9e-98 AT3G55440 419 / 5e-150 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.008G056300 [exp] 284 / 5e-96 AT3G55440 400 / 1e-142 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00121 [flax] [poplar] TIM Triosephosphate isomerase
Representative CDS sequence Show only first row Show all	>Lus10012171 pacid=23154905 polypeptide=Lus10012171 locus=Lus10012171.g ID=Lus10012171.BGIv1.0 annot-version=v1.0 ATGGCGGCGATGCTCTCAACCTCACTTGCAGGCCCCAAGTCCGCCGCTGTTTACTCCCCACCTAACTTCTCAGGCCGATCTTCCAACCTTTCTTCTTCCC AGCTCCGTTTGCCACATCATCTATCAGCTCGTAAGCCTTCCAGAGCCACCGTTGTTGCAATGGCTGGAACCGGAAAGTTCTTTGTTGGAGGAAACTGGAA ATGTAATGGAACAAAAGACTCCATCACCAAGCTCGTCTCGGACTTGAACAGTGCAAACTTGGAGTCTGATGTTGATGTTGTCGTAGCGCCTCCATTCGTT TACATCGATCAGGTCAAGTCTTCCTTGACTGGTAGAATCGAGGTATCTGCACAGAACTCTTGGATCAGCAAAGGTGGCGCTTTCACTGGTGAAATTAGCG TGGAGCAACTGAAAGATCTAGGGGCGAAGTGGGTCATTCTCGGGCATTCTGAGCGTAGACACGTTATTGGTGAAGACGATCAGTTCATAGGGAAGAAGGC TGCATATGCCTTGACCGAAGGACTAGGGGTGATTGCTTGTATCGGAGAACTCTTAGAAGACAGAGAAGCTGGGAAGACTTTCGACGTCTGCTTCACACAG TTGAAAGCTTATGCAGATGCAGTGCCTAGCTGGGACAATGTGGTCATAGCCTACGAGCCGGTATGGGCTATTGGAACCGGTAAAGTGGCATCACCACAGC AGGCTCAAGAAGTTCATGTTGCTGTCCGAGATTGGCTTAAGAAGAACGTCTCTGACGAAGTTGCTTCCAAGACCCGAATCATCTATGGAGGGTCTGTAAA TGGTGGCAACTGTGCCGAGCTCGCGAAGCAAGAAGACATCGATGGCTTCCTTGTTGGTGGTGCTTCTTTGAAGGGACCCGAGTTTGCCACCATTGTGAAC TCAGTGACATCGAAGAAAGTCACCGTTTGA
AA sequence Show only first row Show all	>Lus10012171 pacid=23154905 polypeptide=Lus10012171 locus=Lus10012171.g ID=Lus10012171.BGIv1.0 annot-version=v1.0 MAAMLSTSLAGPKSAAVYSPPNFSGRSSNLSSSQLRLPHHLSARKPSRATVVAMAGTGKFFVGGNWKCNGTKDSITKLVSDLNSANLESDVDVVVAPPFV YIDQVKSSLTGRIEVSAQNSWISKGGAFTGEISVEQLKDLGAKWVILGHSERRHVIGEDDQFIGKKAAYALTEGLGVIACIGELLEDREAGKTFDVCFTQ LKAYADAVPSWDNVVIAYEPVWAIGTGKVASPQQAQEVHVAVRDWLKKNVSDEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFATIVN SVTSKKVTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10012171 [exp]	0	1
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10038318 [exp]	4.0	0.8992
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	4.9	0.8864
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10022853 [exp]	8.1	0.8108
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10030547 [exp]	8.5	0.8625
AT1G75760			ER lumen protein retaining rec...		Lus10021097 [exp]	8.7	0.8167
AT3G58730			vacuolar ATP synthase subunit ...		Lus10038979 [exp]	9.9	0.8433
AT2G42005			Transmembrane amino acid trans...		Lus10001390 [exp]	10.5	0.8545
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10019007 [exp]	12.0	0.8006
AT3G61550			RING/U-box superfamily protein...		Lus10036404 [exp]	13.5	0.8289
AT4G09670			Oxidoreductase family protein ...		Lus10001327 [exp]	14.8	0.8348

Compare expression of checked genes

Lus10012171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.