Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54910 806 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 335 / 4e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 328 / 3e-101 DEA(D/H)-box RNA helicase family protein (.1) AT1G71370 256 / 1e-75 DEA(D/H)-box RNA helicase family protein (.1) AT5G05450 246 / 1e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 238 / 1e-68 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT5G63630 241 / 7e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08610 237 / 3e-66 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40700 226 / 5e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 210 / 8e-60 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007574 [exp] 1420 / 0 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10027240 [exp] 345 / 4e-108 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 344 / 8e-108 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 342 / 3e-107 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008989 [exp] 277 / 2e-84 AT3G18600 508 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004017 [exp] 245 / 9e-71 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009838 [exp] 238 / 3e-68 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030265 [exp] 242 / 2e-66 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10012874 [exp] 227 / 4e-64 AT2G40700 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423300 [exp] 999 / 0 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G250700 [exp] 348 / 2e-109 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 342 / 4e-107 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G073100 [exp] 243 / 2e-70 AT5G05450 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G059100 [exp] 223 / 5e-63 AT2G40700 814 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G068800 [exp] 219 / 8e-63 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.014G097700 [exp] 223 / 1e-61 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G169800 [exp] 221 / 4e-61 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G249100 [exp] 206 / 2e-58 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G185900 [exp] 207 / 5e-56 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10012172 pacid=23154939 polypeptide=Lus10012172 locus=Lus10012172.g ID=Lus10012172.BGIv1.0 annot-version=v1.0 ATGGCGGGCATGGGTGACGGCTACGTCCGCCGCCTGGAGAAGCAGCTAGGAGCTGAGCGTCGAAAAATCGCGAAGCTGAAGGCCAAGTCCGCGTCCGGTA ATGGCCAGACTGGCCTTCTCCAGCTCGGTTCAAGTACATCGAAGTATGAGCTAATGTTTACGGGAATGGTTACTGTACCGAATAAGATTGAAGAAAAGGA GAAGAAGAAGCTTCAGAAGCTACGCCAAGAGGGGGAGGAACCGCAGCTAGCTAAACGGAAGAAGATGGTAACCAAAACGAAGTCGAATGCCAAGGCAATC CGACAGGAGCGGCGAACGGCCGAACTGGATGAAATCTCTTTACTGAAGGAGTGGATTGAATCCCAAAAACCTGAATCCGGATCCAACCCGCTTGCCCTCA AACCACATCCGGACAATGCACCAGTCGGCCGCCTCCAAGACGGCAGCTTCTCTGCTTATTCTGCTGCGGTGAAGTTTCGCGAATTGCCGTTGTCGAAGAA GACAGTTGATGCTCTGACGAAGAGCGGTTACGTCAACATGACTGAGATTCAAAGAGCTTCCTTGCCCCACGCCCTCTGCGGCAGGGATGTTCTTGGTGCC GCTAAAACTGGCTCTGGCAAAACTTTGGCTTTTGTGATCCCTGTGCTGGAGAAGTTACACAGTGAGAGGTGGGGTCCCGAGGATGGAGTAGGGAGTATTA TAATCTCACCGACAAGGGAACTGGCTGGCCAGCTGTTTGATGTGCTGAAAACTGTTGGCAAGTTCCACAGCTTCAGTGCTGGTTTGTTGATCGGTGGCCG GAAGGAGGTTGACATGGAGAAGGAGCGTGTAAATAAACTCAACATACTGGTTTGTACTCCTGGTCGTCTTCTTCAGCATATGAATGAGACCCCCAACTTC AATTGCTCTCAACTTCAGATTTTGGTTCTGGACGAGGCAGATCGCATTCTCGATGTTGGCTTTAAGACGTCTTTGAATGCAATTGTTTCACAGCTTCCTA AGCACAGGCAAACTTTTCTTTTTTCTGCTACGCAAACAAAGTCTGTCCAGGATCTTGCAAGGCTAAGTTTGAAGGACCCAGAGTACATCAGTGTTCATGA GAAGGCCGATTCTGCTACCCCTAGTCGGTTGCAGCAGACAGCGATGATTGTTCCTTTGGATCAAAAGCTAGATATGTTATGGAGTTTTGTCAAGGCACAT CTTAACTCCAAAATCCTTGTTTTTCTTTCTACTTGCAAACAGGTGAAGTTTGTTTTTGAAGCATTCAAAAAGCTGCGGCCTGGAATTCCACTAAAATGCC TCCATGGGAGGATGAAGCAGGAGAGAAGGTCAGTTATTTATTCTCAATTCTGTGAGCAGCGGTCAGTTCTGTTCTCGACCGATGTGGCTGCCAGAGGTCT TGACTTCAATAAAGCAGTTGACTGGGTTGTCCAGATGGACTGTCCAGATGATGTTCCATCCTATATACACAGAGTTGGCCGTACTGCACGATACCTGTCA GGGGGGAGATCTGTTTTGTTTTTGGCACCATCAGAAATGCAAATGCTTGAAAAGTTGAAAGCTGCCAATATTCCTCTAAAGTTCATAAAGGCTAATAAAA CAAAATGGCTGCAACCAGTTTCCGGGTTACTATCAGCTTTGTTGGTGAAACATTCTGAACTGCAGGAGTTGGCTGCAAAGGCCTTTATAAGATACATGCG TTCTATACACGTTCAGAAAGACAAAGAGGTTTTCGATGTGATGAAATTGCCCATTGATGAATTTGCAGCGTCAATGGGTCTGCCCCTCACCCCTAAGATA CGGTTTGTGGAAAGAAAACTCAAGGGCAAGAGGTTGGCTGGAGAATCTTCTGTTGTTGAAATGGAACCAGCAGACATTAAGAAACCAAAGACCACTAGCA AGTTAAAGGATGAATCCTTGGATATACCAACAGATTTACTTGAGGTAGGAGACTCGGAGGAAGAGGATGTGGATAAAGATCTCCTTCATTCTAAGCAGAC CGGAAATGAGAGCAGTGATAAATCGATGGAAATAAGAGACACAATGCTTGGAACCCGCATCTCCAAGAAGAAAAAGCTGAAGATCAACATCCATAGACCT GTTGGAACGAGAGTTGTTTTTGATGAAGAAGGGAAAACACTTGCTCCACTGGCAAGGGTGGCTGGGTCAAACAATGCTGAAGATGATTCTTCTTTGCTTG ACAAAGAGAAAAGAGATGAGTATTATCAGAAGATGAGAGAAGAGATGAAGAAAGTGGACAAGGTAGACAAGGTTGTTGACAGCCAACGTCGTAGAGAGAA GCGAATGAAGGAGAAGATAAAGCGGAAGAGAGGACTCGGCGATGAAGAAGAAGAGGAAGATGAAGATGTATCTGGTTCAGAAGGAGAAGGAACGAATGGA AGGAAGAAATCCAACAAGAGATCAAAGATATATTTCAATAGTGACGACAGTGATGATGAGGAGGGTGGAAAGAAAGACAAAATAGACTCTATATCTCTAG CAGAACAAGAAGCTCTGGCGCTGAAGCTGTTGAGTAACATGCACCATTAG
AA sequence Show only first row Show all	>Lus10012172 pacid=23154939 polypeptide=Lus10012172 locus=Lus10012172.g ID=Lus10012172.BGIv1.0 annot-version=v1.0 MAGMGDGYVRRLEKQLGAERRKIAKLKAKSASGNGQTGLLQLGSSTSKYELMFTGMVTVPNKIEEKEKKKLQKLRQEGEEPQLAKRKKMVTKTKSNAKAI RQERRTAELDEISLLKEWIESQKPESGSNPLALKPHPDNAPVGRLQDGSFSAYSAAVKFRELPLSKKTVDALTKSGYVNMTEIQRASLPHALCGRDVLGA AKTGSGKTLAFVIPVLEKLHSERWGPEDGVGSIIISPTRELAGQLFDVLKTVGKFHSFSAGLLIGGRKEVDMEKERVNKLNILVCTPGRLLQHMNETPNF NCSQLQILVLDEADRILDVGFKTSLNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPEYISVHEKADSATPSRLQQTAMIVPLDQKLDMLWSFVKAH LNSKILVFLSTCKQVKFVFEAFKKLRPGIPLKCLHGRMKQERRSVIYSQFCEQRSVLFSTDVAARGLDFNKAVDWVVQMDCPDDVPSYIHRVGRTARYLS GGRSVLFLAPSEMQMLEKLKAANIPLKFIKANKTKWLQPVSGLLSALLVKHSELQELAAKAFIRYMRSIHVQKDKEVFDVMKLPIDEFAASMGLPLTPKI RFVERKLKGKRLAGESSVVEMEPADIKKPKTTSKLKDESLDIPTDLLEVGDSEEEDVDKDLLHSKQTGNESSDKSMEIRDTMLGTRISKKKKLKINIHRP VGTRVVFDEEGKTLAPLARVAGSNNAEDDSSLLDKEKRDEYYQKMREEMKKVDKVDKVVDSQRRREKRMKEKIKRKRGLGDEEEEEDEDVSGSEGEGTNG RKKSNKRSKIYFNSDDSDDEEGGKKDKIDSISLAEQEALALKLLSNMHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10012172 [exp]	0	1
AT4G28450			nucleotide binding;protein bin...		Lus10037378 [exp]	2.0	0.8285
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	2.4	0.8476
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Lus10003558 [exp]	6.3	0.8078
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	7.9	0.8095
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015201 [exp]	8.8	0.7791
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10008806 [exp]	11.6	0.7853
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10006269 [exp]	14.1	0.7728
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	14.5	0.7832
AT4G16100			Protein of unknown function (D...		Lus10016841 [exp]	17.0	0.7692
AT1G56350			Peptide chain release factor 2...		Lus10010922 [exp]	23.8	0.6954

Compare expression of checked genes

Lus10012172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.