Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21180 59 / 7e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007573 [exp] 144 / 2e-45 AT2G21180 103 / 1e-29 unknown protein Lus10026283 [exp] 102 / 4e-29 AT2G21180 99 / 2e-27 unknown protein Lus10042391 [exp] 99 / 1e-25 AT2G16595 182 / 2e-56 Translocon-associated protein (TRAP), alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167700 [exp] 83 / 2e-21 AT2G21180 91 / 2e-24 unknown protein Potri.009G129200 [exp] 53 / 6e-10 AT2G21180 55 / 2e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012173 pacid=23154934 polypeptide=Lus10012173 locus=Lus10012173.g ID=Lus10012173.BGIv1.0 annot-version=v1.0 ATGCATTACTACAGAAGCAGGAGCGACTCGTTCCTCGACTCCTTCACCATATACCCGCTCCCGTACCCGGTGCTCCTCCTCCTCGCCGTGATCTTCATCT TCCTCGGCGGATCCTGGTACTTCAGCTACGAGGAGCTCGTCGAATCCACCGAATCGCAGTTCGGCTGGGCTCTGTTTCTCGTCCCGGTGATCCTCATCTT CCTCGTGCAGTGGCTATCATCCTTCGACAGCGCCGGGATGTTCAGTCTCTCGAGCCGGCGGACTCACTACTACCAGCAGCCGTCGTCGGACGGCGGAGGG ACCTCGCCCTGGGGAGTCGCGGCGTTGATTGTTGTCCTGCTTGTTCTGTTGCAGTACCAGTCCGCTTTTCTTGACAGCTGGTTCTTCTGA
AA sequence Show only first row Show all	>Lus10012173 pacid=23154934 polypeptide=Lus10012173 locus=Lus10012173.g ID=Lus10012173.BGIv1.0 annot-version=v1.0 MHYYRSRSDSFLDSFTIYPLPYPVLLLLAVIFIFLGGSWYFSYEELVESTESQFGWALFLVPVILIFLVQWLSSFDSAGMFSLSSRRTHYYQQPSSDGGG TSPWGVAALIVVLLVLLQYQSAFLDSWFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21180			unknown protein		Lus10012173 [exp]	0	1
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	2.4	0.9606
AT2G21180			unknown protein		Lus10007573 [exp]	2.6	0.9389
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	9.6	0.9486
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	12.6	0.9373
AT5G42710			unknown protein		Lus10010807 [exp]	13.2	0.9401
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10009839 [exp]	16.2	0.9449
					Lus10011724 [exp]	16.6	0.9482
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	17.2	0.9323
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	20.2	0.9448
AT3G52480			unknown protein		Lus10004203 [exp]	20.6	0.9352

Compare expression of checked genes

Lus10012173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.