Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30150 1193 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007572 [exp] 3717 / 0 AT4G30150 1258 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167600 [exp] 1813 / 0 AT4G30150 1491 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10441 [flax] [poplar] Urb2 Urb2/Npa2 family
Representative CDS sequence Show only first row Show all	>Lus10012174 pacid=23154943 polypeptide=Lus10012174 locus=Lus10012174.g ID=Lus10012174.BGIv1.0 annot-version=v1.0 ATGGCTGGTTCGTCAGTGAAGAAGTCAGAGAAGCAGAAGAATAAGAGGAAGCTAGTATCAACACCTGATCAGAAAGACAGACCTTCAAAGTTAGCACGTA CTGATGACTCCAAGCATAGGAAGGTGAGACATGATGAAGTTCCGGAGGAAGCTGTAACTTCACAGAGCGATGAATTGGGATCAAATTTTGAGCTAGGGCG CCGGGCGTGGAGGAACCTAGACTTGATTCTACTGCTCGAGAATTACGGAGTTGATATTTCGAAGAAGGTTGAAGTCGCTTATGATTTCGTGAAATGGAGA GGAAAGGAAGGACCTGACTATGATGATGAAGAAATTGAAACGATTAAAGTAGCTAGGCTTGTAGTTTTCCTTAACGATTGGGTGCAAACACAGCTGATAT CTACTCACAAGAAGCTCGAATCAGGAGAGGCGTGTCTGGACTATAGATGTTGGGCGATTTTAAAGTTCTGTTTGGAGGAGTCGTTGAGGTCGCAGGCTTC GTTGACTTTCCATCGGAATCTTATACGAGCTCTAGGATGCGTTGCGGGGAACATGTGCAATGGTTCAGCAGGATTGTCTCGTGCAGGCAACGATGAACTT GAGTTTAGGACGGTTGTTTTCGATTGTGTTTCTCATATGTTTGGCAGCCATGGTGGGTTGTCAAATGAGAATCTAGCCCTCTGGGTTTCGACTGTCCAGA TAGTCGCTGGACTTGTGAAACAAATTTGTGGTGAGAAGGTTGGTTATGGCGATTTGGATACTGTGGCATTGAAGTTTTCTAGCTTGGTGCTTGATGCTTT TGCCAATTTTTTGAAGGCTCATCCTACTCGAAAGAATGGATTCCGGGATTTTGTGAATAGACTTCTGGATCCACTTTTGAGCTTGTTGGGTCTATTACAC AATAAGTTAGATGGACAGAACCCAGACGTTACAAGAAAGTTACTGTGTGCAGTTGAGGAAATTTTAGCTAGTGGTATATTTCATCAGACACATATTGACG AGTTTCTCTCCTTACAGAGTACTGGGAAGTATGCATCAGCTGATGGTGGTGACCGGAAGGAGCTGAGAACGGAGCCTTTAAGTTATCACAGGCATTTCTT TGAGAAGTTGGAAAGGGTTATGGTTGCAAAGGAAGAGTCTTCCTTGAATAGCTTGGGACAACTGTTCCACGTACTTGTTGATCGGGTGAAAAAGAAAAAG ACAGCTCAACCCCTTTATGGTGATGCGAAGAAGAGCGAGAAAACCGAAAGCTCAAAACACATTCCTCTTACTGTTTCTGAGACAGTTCCTAACTGTTTAA ATGCAGAGAACAGAAAATCAATTTTTGACTTCTTCGTGCAGATTATGGATCCCCTTTTGCTTGAGATGAATGTCTACCTCGAAGCTAAGTTGGAACTAGG TCCTATGTTATTAGATGTTCATCGTACAATGAAGTCCATTAATGTTTTACTAGGAAGCTTTTTGAAGGAAAAGTTTTATATGAAAGCAGAAGATACTTCT GGAGGAGCCTGTCTTAATTTCTTAAAGCAGGTGTATGACACTATATTCTCATTAGCCACCGGTATTCTTAGGTTTTTCGTCCATGATGCGGATGCAAAGG AGAAAACCTTTAATTTACTAGCACCGGAGCTACTTATTGCTGTCGGATACCTTTTGGAGATTGAATATGAAGTGACCAATAATGACTTAACGAGCTTATG GCACATGATACTTTCGTACTTTGCTGTTGGATGTGAATGTAAAAGTGCACCTGATCAAGAGTCGTTCACCTTCCTAGGTGTACGACTTGGATGCCAGATA TTAAATATCTATAGTGAACTGCGGCAGGTGACAAGTGCAATATCTACCCTCTGTAAAGCTATCAGGCTCGTGGTAACACACGAGAACGATGCTACTGAGA ATCAAAAGGATCACATAAAATTTTCCTCCTCATGGTTTCCCCAAAATACCTTTGGGAAAACTCTGGGCCTTCTTTTATCCTCGCAAGCTTTTAGACTTGC AATGCATAATGCTATAAAATGCCTTCCAGAAGGACAGGCAGGTGACTGCATGCAAAAGTTATGTGTAGAGGTGTCTCAATCCATGCAATGGATAAAAGAT AGTGCTTCTGTGGAAGATCACGTAAAGGGTAATAAAGCGAGTAAAAGAAGTCATAGAACACTTTATTTTGATCTTCGAGAGGAAATCTTTGGAAGATTGT CTGAAATTTACACGGTGGTTCTAGAATCTATAACTGTTACTGCTGGCAACTGTACCTTAGTTGAGCGATGTCTAAAGGACTTGGTGGCTACAATAAGTCC CTGCATGAGTACCCTGGTTGGGCTAGAACCAGATAGTGTCAACCAGTTCATTCATTCCGTTACTGAAAGAGGAAGATACAGGATTAAGAATGGCACTTTT AAATGCGGTCATTCTGGCCATTGGGTCATTCTATTTTTCCTCCACCTGCACATGTCGTGTAGAAGCTTGTATAGGCAGGTACTTAGCCTGCTGCCTCCAA GTTTGTCAAGAAAGATGTCAGAAGCAGTTGGTGATTCACTTACTGCCTACTCTGGCAAAGACTGGATGGACAGGACGGAATGGACAGTTGAGGGGTATTT TTCCTCGATTCTTCAATCCTCAGCTTCTCTTCTCAGCGTTATGCAGTCCACTTCTGATTTTTGTTCCAGAACGAGTACTGCTGACTCCTCCCCCCTTCTC TATACATATCATGCTGCTGCACTTCAGAGGCTTCATGATTTGAATAGGCAGATAAAGTCTCTAGAATACATCCTGGACGGCAATGACAAGACTGTAAAGA ACAAGTTGGTTGATGACTCAGATGCATCTTTATATCGTAAACGGAGTAGAAAATTAGGTAAACGCATCTCTGTTTTGAAGCAGGAGGCAATGGATCTTAC CGAGTATTCAATGAGTTGCCTCTCACTAGTGGTTGATGGTCAACTCTCATATGATCTTTATAGTGAATGGAATTGGAGCGTTTGTTCTATTCAGAAGACC TCATTTCCTATTGCATTTTGGTGGCTGGTTTGCAGAAATATCGATGTATGGGCTATACATGCTAGTAAGAAGAAGTTGAAAACTTTTCTCTCAAATCTGA TCATTACTTCACTTCCATATATGGGAAAACAGCATGGAAATGAAGCTCATTCGCTAAATACAATCTCTCTAGGACACATTTCATCAGAGCTTCTCATGGA CAGTAACTTATACGAACACAAATTTGTTTGCAGGCTTTTCACCTCAAGATATTTTCGTTTGTTGGAAGACTCCGCCGTGTCATTATCTGGTGACTTAATG TTCATGGATGAGGAAAATTTGAGTTCTTGCATTGATTGGCCAAAGGTGCTAAAAGAACTTGGCAACTGGCCAGCTGTTGTCTCAAAGAGCAAACTGTTTG GAAACAAGTATTCTTCCGATGAGGAAAAAGTGTCTAAGGACGAGTGTCCCTATTCAGTTGTGTTGAACAGTACAGCCTGCCAGAAGTTACTAAACCTTTT GTGTTGGCTGCCAAAAGGATGGATGAATTCAAAGTCGTTCTCCCTCTCTATAACTTATGTACTCAACATAGAAAGGGTTTTAATTGGCAAATTGTTAACC TGCCATACAAACTGGTCATATAAGCAGCAGGAACTCTTAAAACTGCTCCTGTGCTGCCGAAGGGCCTTGAAATACACAGTTATGGCATTTTGCGAGGAGA ATATTGGTAAACAATCATCACATATGCCAGTGTTTACCGAGGACATAGATGCTATTCTATGGCTTCTCAAGTCGGTATCTGCTGTAGCTGGGCTTCAAGA AAATTTGCCACAAGATTATGTAGATGAAGTTAGAGAGACAATTTTCTCTATGACGGATCACACTTCATACATATTCTTGACCTTAAGCAAATATCACTCC TTGTGTGCATTCAGCACTCTACTCGAAGGGAAAGCTAGCAAAGAGAACGTTGGCTCTGCTGATGATCAGGAAAGTATTGATTCAGATGAATCTAGTCCGT GCTCTGAAGAAGTGGTAGCCTTGAAAAGCTTTCGCATTACTGCAAAGAGTTTAAAGAAAGAATCAGAGGGCTTTCTTAATTCCTTAAATGTTCTCCTTTC CAATGACTGTTCGGGGGATGGAGTTAGTGCTGCAAATCTCCAGAAACTATCCTCTGCGGTTTCTTGCTTCAGCGGTTTCTTGTGGGGCTTCGCCTCTGTT TATAATGATGCTCATATAATAGATAATGAGCTTCAGAAGAAGTTTTTGCTTTCCAAACCTGACCTTGTTGCTACGCTCAATTCCTGTGTAAGTGCATTTT CTGATTTTGTTACGGCATGCTTGTTCATGTTTCCGGCTGAGGATAGACATCAACCTGAGAGTACATCTGATTCTCCTGATTACCATATGCCTGATGGAAG CGGTGGTTTGTTGGATGCATGGAGACTCGCCTCTAAAACCTCCGTAAAGACCGGAATTTCGTGCTCCAAGCAGCAGAATTCACTTTCCGAAGATGATTCT TTTCAGATATCACCGGTAAAGTACCCCTTGCAGAGTCTTATTGAAGGCAAACATCCGGAAGCTGGAAACTTAATCAGACAGCTTTTACTTGCTTCATCAG CCATTTTGAAGCTCAATTTGCAAATGGGATGTACACCCTGCTCTGCCTTGGTTTCAAGTTCTATCAGTGTATCTGAGTCATTGCTGCTGAAGTTCATCGA CACCTATGAAGTGTCAAAACCGCACCTTATTATTTGGTTAGATGGAGTTCTGAAGTATCTGGAAGAACTTGGCGGTCAGGTTTGTACTATGTCGACAAGG GATCCTTATACCAGGCTTGTAGAGTTGCACTTAAGGGCTCTAGGAAAGTGCATCTCTTTACAAGGGAAAGAAGCCAATCTTGCTGCCCATGATTCTGAAA CGAGTTCTAAAATCATGCTGGGACATTCAGGATCTCTTGAAGTATCACAAAGCTACGGTCCACGCTACTTGGATGAACTCAAATCAAGATTGAGATTGTC TTTTAAAGTGCTTGTAAGAAAATCATCAGAGTGGCACTTGCGGTCTGCAGTACAGACTGTAGAGAAGGCACTGGTAGGAGTCCACGAACGTTATTTGGCA ATCTATCAAATAACGCTGGGAGGTCCAGACGGCGGAAAGGTTTGCCCCACTGTTGCTGCCGGCATAGATTGCTTGGATCTCATTCTCGAATATGTTTCAG GCCGCAAACCGATGAATGCTGTTAAGAAACACATTCAAAGCCTACTTTCTGCATTATTCAACATTATCTTACACCTGCAAGGTCCCTTAATTTTCAACAG AAGAGCAAATTCTGGTAGAGATGGTGTTCTTCCGGATCCGGGGGCAGTTATTCTCATGTCTGCTGAAGTACTCACAAGGGTGTCCGCGAAGTGTACTCTG TTCCATTTGGAATCCTCGCATGTAGCGCAATCATTACACGTACCTGCTGCACTGTTTGAAGACTTCAGTAAGCTCATGGATCCTTCCCTTGTAGATCGAC GGTTCTCTATCGACTTATATGCTGCGTGTTGCCGATTGTTGTCGACTGTTGTGAAGTATCATAAAAGCGAGTCGGAATGTAACGTGGCCCTCCTGCAAGA GTCTTCCTCTGTGCTGCTACACTCTTTGGAAACGGTCAACACTGATTCAGACGTTGGCAGAGGTTACTTCTCATGGAACACTGATGAGGCGGTGAAATGC GCTTGCTTTTTTCGAAGGATCTATGAAGAGCTACGACAGCAGAGAGATGTTTTCGGGAAGTACTGTTCGAAGTTCTTATACAGTTACATATGGGTTTATT CGGGCAATGGTCCTCGTAAAGCTGGCATCAAAAGGGAACTAGACGAAGCCCTTAAACCTGGCGTTTACGCACTGATCGATGCTTGTTCTGTTGAAGATCT CCAAAACCTGCACAATGCATTTGGAGAGGGTCCTTGCAGAAACACATTAGCTGCTCTGTCACACGACTACAAACTGAATTTCCAGTATGGAGGCAAAGTC TGA
AA sequence Show only first row Show all	>Lus10012174 pacid=23154943 polypeptide=Lus10012174 locus=Lus10012174.g ID=Lus10012174.BGIv1.0 annot-version=v1.0 MAGSSVKKSEKQKNKRKLVSTPDQKDRPSKLARTDDSKHRKVRHDEVPEEAVTSQSDELGSNFELGRRAWRNLDLILLLENYGVDISKKVEVAYDFVKWR GKEGPDYDDEEIETIKVARLVVFLNDWVQTQLISTHKKLESGEACLDYRCWAILKFCLEESLRSQASLTFHRNLIRALGCVAGNMCNGSAGLSRAGNDEL EFRTVVFDCVSHMFGSHGGLSNENLALWVSTVQIVAGLVKQICGEKVGYGDLDTVALKFSSLVLDAFANFLKAHPTRKNGFRDFVNRLLDPLLSLLGLLH NKLDGQNPDVTRKLLCAVEEILASGIFHQTHIDEFLSLQSTGKYASADGGDRKELRTEPLSYHRHFFEKLERVMVAKEESSLNSLGQLFHVLVDRVKKKK TAQPLYGDAKKSEKTESSKHIPLTVSETVPNCLNAENRKSIFDFFVQIMDPLLLEMNVYLEAKLELGPMLLDVHRTMKSINVLLGSFLKEKFYMKAEDTS GGACLNFLKQVYDTIFSLATGILRFFVHDADAKEKTFNLLAPELLIAVGYLLEIEYEVTNNDLTSLWHMILSYFAVGCECKSAPDQESFTFLGVRLGCQI LNIYSELRQVTSAISTLCKAIRLVVTHENDATENQKDHIKFSSSWFPQNTFGKTLGLLLSSQAFRLAMHNAIKCLPEGQAGDCMQKLCVEVSQSMQWIKD SASVEDHVKGNKASKRSHRTLYFDLREEIFGRLSEIYTVVLESITVTAGNCTLVERCLKDLVATISPCMSTLVGLEPDSVNQFIHSVTERGRYRIKNGTF KCGHSGHWVILFFLHLHMSCRSLYRQVLSLLPPSLSRKMSEAVGDSLTAYSGKDWMDRTEWTVEGYFSSILQSSASLLSVMQSTSDFCSRTSTADSSPLL YTYHAAALQRLHDLNRQIKSLEYILDGNDKTVKNKLVDDSDASLYRKRSRKLGKRISVLKQEAMDLTEYSMSCLSLVVDGQLSYDLYSEWNWSVCSIQKT SFPIAFWWLVCRNIDVWAIHASKKKLKTFLSNLIITSLPYMGKQHGNEAHSLNTISLGHISSELLMDSNLYEHKFVCRLFTSRYFRLLEDSAVSLSGDLM FMDEENLSSCIDWPKVLKELGNWPAVVSKSKLFGNKYSSDEEKVSKDECPYSVVLNSTACQKLLNLLCWLPKGWMNSKSFSLSITYVLNIERVLIGKLLT CHTNWSYKQQELLKLLLCCRRALKYTVMAFCEENIGKQSSHMPVFTEDIDAILWLLKSVSAVAGLQENLPQDYVDEVRETIFSMTDHTSYIFLTLSKYHS LCAFSTLLEGKASKENVGSADDQESIDSDESSPCSEEVVALKSFRITAKSLKKESEGFLNSLNVLLSNDCSGDGVSAANLQKLSSAVSCFSGFLWGFASV YNDAHIIDNELQKKFLLSKPDLVATLNSCVSAFSDFVTACLFMFPAEDRHQPESTSDSPDYHMPDGSGGLLDAWRLASKTSVKTGISCSKQQNSLSEDDS FQISPVKYPLQSLIEGKHPEAGNLIRQLLLASSAILKLNLQMGCTPCSALVSSSISVSESLLLKFIDTYEVSKPHLIIWLDGVLKYLEELGGQVCTMSTR DPYTRLVELHLRALGKCISLQGKEANLAAHDSETSSKIMLGHSGSLEVSQSYGPRYLDELKSRLRLSFKVLVRKSSEWHLRSAVQTVEKALVGVHERYLA IYQITLGGPDGGKVCPTVAAGIDCLDLILEYVSGRKPMNAVKKHIQSLLSALFNIILHLQGPLIFNRRANSGRDGVLPDPGAVILMSAEVLTRVSAKCTL FHLESSHVAQSLHVPAALFEDFSKLMDPSLVDRRFSIDLYAACCRLLSTVVKYHKSESECNVALLQESSSVLLHSLETVNTDSDVGRGYFSWNTDEAVKC ACFFRRIYEELRQQRDVFGKYCSKFLYSYIWVYSGNGPRKAGIKRELDEALKPGVYALIDACSVEDLQNLHNAFGEGPCRNTLAALSHDYKLNFQYGGKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30150			unknown protein		Lus10012174 [exp]	0	1
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	3.0	0.9599
AT3G55160			unknown protein		Lus10015366 [exp]	4.9	0.9505
AT1G10490			Domain of unknown function (DU...		Lus10005792 [exp]	4.9	0.9422
AT4G30150			unknown protein		Lus10007572 [exp]	5.0	0.9427
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	6.0	0.9438
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041555 [exp]	6.5	0.9381
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	7.2	0.9428
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10025091 [exp]	9.8	0.9380
AT5G64420			DNA polymerase V family (.1)		Lus10025659 [exp]	11.4	0.9088
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10023991 [exp]	14.4	0.9324

Compare expression of checked genes

Lus10012174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.