Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34830 761 / 0 PDE346, MRL1 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63070 139 / 3e-34 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G31400 140 / 9e-34 GUN1 genomes uncoupled 1 (.1) AT5G42310 136 / 1e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09900 134 / 2e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12620 132 / 6e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 132 / 9e-32 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G53700 133 / 1e-31 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 133 / 1e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 132 / 2e-31 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007565 [exp] 1692 / 0 AT4G34830 797 / 0.0 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 156 / 1e-38 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003657 [exp] 154 / 1e-38 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10022290 [exp] 152 / 7e-38 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10021989 [exp] 147 / 1e-35 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 142 / 5e-34 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10014245 [exp] 133 / 5e-32 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10019524 [exp] 134 / 7e-32 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 133 / 2e-31 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G166600 [exp] 971 / 0 AT4G34830 1044 / 0.0 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G193900 [exp] 153 / 7e-38 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.016G025600 [exp] 150 / 3e-37 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G118500 [exp] 145 / 3e-35 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.006G264800 [exp] 144 / 1e-34 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.009G105600 [exp] 141 / 3e-34 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 137 / 1e-33 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 138 / 2e-33 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 138 / 2e-33 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 135 / 1e-32 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012180 pacid=23154973 polypeptide=Lus10012180 locus=Lus10012180.g ID=Lus10012180.BGIv1.0 annot-version=v1.0 ATGAACTTAGTGTTGTCTCATTTGAGCTCAAGCATCAGGAGCCACATTAATGGCAATAGGTCTATATGTCTTCGAGATGTTCAGAATGGGGTTTCTCGAC ACTTCGGGTTGAAGGTAGAAGAGAAGGTCTCGATTCCGGTTATTAATGACAAGCATTTACAACTGGACGAAGTGCACTATGGTTCTACTGGCTTGGCTGA AGAAACCGTGGAGTCTCCTGCTGCAGTGTTGGCTGCCTCTACAGTTCGTGAGCATGTGGTTGCTAAAGAGCCGGCTCCTGTTACTGCCGCTTTGCCTCTA GTTTTTGAAGGAGAAACTTCTGACTCTATTCCAGAGAACCCACGAGAAGAAAATGGTTCGCCTCATGGCGGAAGTGACGATGCTCACATTCAAGGGACAC ATTATAGTTCTGTGATAACTGAAATGAGGGTATCCTGTGCTGCTGATTTTCTGGCCTCTTCTGCTCTAAACAATGTGGCTTACAAAGATTCTGAAGCTGC TAATGATACCGTATCACCTATCTTTGTGAACGGAGCAGTGAAATTTCCCCCGGAAAAGATTGGAGATATTCCACAATTGAAGCCCGAGTCTGCTGATGAA GTGGAAAGTGAGTTGTCTAGCTCGACTTCGACAACACGGGATGATGAATTAGGCATGCTGAGTAATAACATTGGAAGCTTCTATAACACCACTGAAGAAT CTGCCAGGGAAGGTCTTTACACATTTTTTGAGCCGAAGGAAACAGACGTCAAATCTGGGACCAAAATAAATGGTTTTAAAACGATATATTCTTCTTACAA ACGAAGAAGTCTTTTCCCTTCGTTGAAAGTGCATTCTTCACAAAGAGGTGCTGAATTATCCACACATACGACCATTCAGACACAAGAACACTCCAACGGA AAATTACCTTGGTCAAATAGGAAAGCGGGTCCTGTCGAGAAGAGTAAAAAAACAGGAAGCAGGAAAGGAAGTGATCAGGGTCCAAAGCCATCAAAGCTCC CAAGCCCTAATGAGTATCATGCGGATGCCAAAACCAAGCCTCCAGAACAGTTCGATACTTACAACTATTTGCTGAAAGATGGAAGGTTAGTAGAATGTGT AGATTTTCTGGAAGACATGGAAAGTAAGGGTTTCCTAGACATGAACAAGGTTTATCATGCCAAGTTTTTTGACATGTGCAAACGTCAGAAGGCTGTTAAG GAAGCTTTCCGTTTCTGCAAGCTAATTCCAAATCCAACATTAAGTACGTTTAACATGCTCATGTCTGTGTGTACAAGTTCACAAGATTCTGCCGGAGCCT TTCAGGTCTTAAGACTTGCCGAGGGAGCTCGACTGCAGCCTGATTGCAAGCTTTATACTACTTTGATATCAACCTGCGCAAAATGTGGAAAAGTTGATGC AATGTTTGAAGTCTTTCATAAGATGGTGAATGCTGATGTCGAACCAAACCTCCACACATATGGAGCTCTAATTGATGGGTGTGCCAAAGCTGGACAAGTG GCTAAGGCATTTGGTGCGTATGGCATAATGAGGTCAAAGAAATTGAAGCCAGATCGAGTTGTATTCAACGCACTTATAACCGCATGTGGTCAATCAGGAG CTGTTGACCGTGCCTTTGACGTGCTGTCAGAAATGGTGGGTGAGGTACACCCTATTGATCCTGATCATGTCACTGTCGGTGCTCTAATAAAGGCATGTGC AAAAGGTGGTCAGGTTGACCGAGCAAAAGAAGTTTACAACATGCTTGATCGGTATAAGATCAAGGGCACTCCGGAAGTCTATACGATTGCCATTCACTGC TGTAGTGAGGCTGGCGATTGGGACTTTGCACATCGTGTGTGCGATGACATGTTAAAGAAAGGCATCCTTCCTGATGAGATGTTCCTGAGTGCATTGATTG ATGTTGCTGGCCACGCTGGGAAAGTCGATATAGCATTTGATATCTTGCAGGAGGCAAGAGAGCAAGGCTCGAAACTTGGAGTTTTGCCGTATAGCTCTTT GATGGGAGCTTGTAGCAATGCCAAAAACTGGCGCAGAGCACTGGAGCTATACTATAACATGAAGGCCCTTATACTAAAGCCAACAGTTCCAACCATGAAT GCTTTGATCACTGCTTTATGTGATGGAGACCAACTGCAAACGGCTGTTGAGCTATTTTCAGACATGAAGAGATTAGGCCTGAAGCCAAACACCATTACAT ACTCTGTTCTCTTGGTGGCAAGTGAGAGAAAGGATGATGTTGACACTGGCGTGATGCTTTTCTCCGAGGCCAAGAAAGATCATATTACACCTACCCTCCT CATGTATAAATGCGTAATTGGCATGTGTCTACATGGTTACGAGAAGGCTTGTACTAGTGGCGTGCCAATCCTATCTGAGTCCGGACAACCCCACATAGTA AATAAATGGACAACACAGGCCTTAACAGTGTACCGTGAAATGCTGGTTGCTGGCGAGAAACCAACGATGGAAGTTGTCTCACAAATTCTAGGAAGCTTGC GGCTCCCTTATGATCCTTCGGTGAAGGAAAGACTCATCGAAAATCTGGACATTACTGTGTACTTATTAACAGTTTTCAGAGGTCTAAAGCACAGGCTTGC TGCTGGTGCCAGGCTGCCCAATGTGATGATTCTGCTTCCCACAGAACAGGGCAAAGTCATTGCTCCTGAACAGGAGAAGACCATAATCCTCGCAGGACGA GTAGCACAAGCTGTAGCTTCGCTACTGAGAAGGCTAGGGATAGCTTATCTAGGGGACGAATCTTACGGAAAGATTCGAATCAATGGCATCACTCTACGAA GATGGTTCCAACCAAAGCTTGCAGCCACTCCTTTCACCGGCAAGCCAGACGAGTTCAACATGTTCCAGTCTCGAACCATCAAAGGAATCAGCAGTCAGCA GCGTGACATTCGATCCGGTCACCTCTCTCTCGACTGA
AA sequence Show only first row Show all	>Lus10012180 pacid=23154973 polypeptide=Lus10012180 locus=Lus10012180.g ID=Lus10012180.BGIv1.0 annot-version=v1.0 MNLVLSHLSSSIRSHINGNRSICLRDVQNGVSRHFGLKVEEKVSIPVINDKHLQLDEVHYGSTGLAEETVESPAAVLAASTVREHVVAKEPAPVTAALPL VFEGETSDSIPENPREENGSPHGGSDDAHIQGTHYSSVITEMRVSCAADFLASSALNNVAYKDSEAANDTVSPIFVNGAVKFPPEKIGDIPQLKPESADE VESELSSSTSTTRDDELGMLSNNIGSFYNTTEESAREGLYTFFEPKETDVKSGTKINGFKTIYSSYKRRSLFPSLKVHSSQRGAELSTHTTIQTQEHSNG KLPWSNRKAGPVEKSKKTGSRKGSDQGPKPSKLPSPNEYHADAKTKPPEQFDTYNYLLKDGRLVECVDFLEDMESKGFLDMNKVYHAKFFDMCKRQKAVK EAFRFCKLIPNPTLSTFNMLMSVCTSSQDSAGAFQVLRLAEGARLQPDCKLYTTLISTCAKCGKVDAMFEVFHKMVNADVEPNLHTYGALIDGCAKAGQV AKAFGAYGIMRSKKLKPDRVVFNALITACGQSGAVDRAFDVLSEMVGEVHPIDPDHVTVGALIKACAKGGQVDRAKEVYNMLDRYKIKGTPEVYTIAIHC CSEAGDWDFAHRVCDDMLKKGILPDEMFLSALIDVAGHAGKVDIAFDILQEAREQGSKLGVLPYSSLMGACSNAKNWRRALELYYNMKALILKPTVPTMN ALITALCDGDQLQTAVELFSDMKRLGLKPNTITYSVLLVASERKDDVDTGVMLFSEAKKDHITPTLLMYKCVIGMCLHGYEKACTSGVPILSESGQPHIV NKWTTQALTVYREMLVAGEKPTMEVVSQILGSLRLPYDPSVKERLIENLDITVYLLTVFRGLKHRLAAGARLPNVMILLPTEQGKVIAPEQEKTIILAGR VAQAVASLLRRLGIAYLGDESYGKIRINGITLRRWFQPKLAATPFTGKPDEFNMFQSRTIKGISSQQRDIRSGHLSLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	0	1
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	1.0	0.9864
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10004009 [exp]	2.0	0.9248
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10038031 [exp]	2.0	0.9460
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10022279 [exp]	2.2	0.9188
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	3.9	0.9393
AT2G41220		GLU2	glutamate synthase 2 (.1)		Lus10003820 [exp]	5.5	0.9077
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Lus10027649 [exp]	6.9	0.9010
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015108 [exp]	7.3	0.9118
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	9.7	0.8978
					Lus10004199 [exp]	10.9	0.8625

Compare expression of checked genes

Lus10012180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.