Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34800 86 / 1e-22 SAUR-like auxin-responsive protein family (.1) AT4G38850 83 / 8e-22 SAUR-AC1, ATSAUR15, ATSR15AU, SAUR15, SAUR_AC1 SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA, ARABIDOPSIS COLUMBIA SAUR GENE 1, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-like auxin-responsive protein family (.1) AT4G34810 84 / 9e-22 SAUR-like auxin-responsive protein family (.1) AT4G38840 83 / 1e-21 SAUR-like auxin-responsive protein family (.1) AT4G34770 82 / 3e-21 SAUR-like auxin-responsive protein family (.1) AT4G38825 78 / 7e-20 SAUR-like auxin-responsive protein family (.1) AT2G21210 78 / 1e-19 SAUR-like auxin-responsive protein family (.1) AT5G18020 77 / 2e-19 SAUR-like auxin-responsive protein family (.1) AT5G18080 77 / 2e-19 SAUR24 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) AT3G03820 76 / 5e-19 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007563 [exp] 245 / 3e-85 AT4G34800 87 / 2e-23 SAUR-like auxin-responsive protein family (.1) Lus10007562 [exp] 182 / 1e-60 AT4G34770 89 / 4e-24 SAUR-like auxin-responsive protein family (.1) Lus10012183 [exp] 178 / 6e-59 AT4G34770 89 / 5e-24 SAUR-like auxin-responsive protein family (.1) Lus10007560 [exp] 89 / 5e-24 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10012185 [exp] 89 / 5e-24 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10007561 [exp] 87 / 4e-23 AT4G34810 125 / 1e-38 SAUR-like auxin-responsive protein family (.1) Lus10012184 [exp] 84 / 8e-22 AT4G34810 125 / 9e-39 SAUR-like auxin-responsive protein family (.1) Lus10026294 [exp] 81 / 1e-20 AT4G34810 124 / 3e-38 SAUR-like auxin-responsive protein family (.1) Lus10042378 [exp] 81 / 1e-20 AT4G34810 129 / 3e-40 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G165800 [exp] 83 / 1e-21 AT4G34770 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.009G126300 [exp] 82 / 2e-21 AT5G18060 123 / 2e-38 SAUR-like auxin-responsive protein family (.1) Potri.009G126700 [exp] 81 / 6e-21 AT4G38840 126 / 3e-39 SAUR-like auxin-responsive protein family (.1) Potri.009G126900 [exp] 81 / 1e-20 AT4G38840 131 / 1e-41 SAUR-like auxin-responsive protein family (.1) Potri.009G127500 [exp] 80 / 1e-20 AT2G21210 128 / 5e-40 SAUR-like auxin-responsive protein family (.1) Potri.004G165200 [exp] 80 / 2e-20 AT5G18020 122 / 6e-38 SAUR-like auxin-responsive protein family (.1) Potri.009G127600 [exp] 81 / 3e-20 AT5G18080 116 / 7e-35 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) Potri.009G127700 [exp] 79 / 3e-20 AT5G18080 114 / 1e-34 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) Potri.004G164800 [exp] 79 / 5e-20 AT4G38840 120 / 3e-37 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 79 / 5e-20 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10012182 pacid=23155001 polypeptide=Lus10012182 locus=Lus10012182.g ID=Lus10012182.BGIv1.0 annot-version=v1.0 ATGGGAATCAGAAGCTTGTTGCCTTCATCAATGGTGGTCGGAGCCAAGAAGATAATGAAGAGGAAGCTGCAAAACCATCGCCACCATTACTATCAACGAC GGCAGAATCAAGAGCTTGGCCGTCGCTATTTCTCGCCATTGACTATTAACGATGACGAGGTGCAATTTTCCGTCCCTAAAGGTCACATTGCGGTGTATGT GTCCGGAGGTGGTGGTGACGGGGATGAGACAATGAAGAGGCTGGTGGTGCCCGTTTCGTACGTGAACCACCCGATGTTTGGGGAGCTGTTGGATCGGGCT GAGGCTGAATTCGGCGGGTTCGATCACCCCATGGGTGCTATTACTCTTCCTTGTGACGAGGATGTTTTCTTCCGAATGCTCTCTCTTCCCGTATTCTGA
AA sequence Show only first row Show all	>Lus10012182 pacid=23155001 polypeptide=Lus10012182 locus=Lus10012182.g ID=Lus10012182.BGIv1.0 annot-version=v1.0 MGIRSLLPSSMVVGAKKIMKRKLQNHRHHYYQRRQNQELGRRYFSPLTINDDEVQFSVPKGHIAVYVSGGGGDGDETMKRLVVPVSYVNHPMFGELLDRA EAEFGGFDHPMGAITLPCDEDVFFRMLSLPVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34800			SAUR-like auxin-responsive pro...		Lus10012182 [exp]	0	1
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	4.1	0.9190
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10000318 [exp]	4.5	0.9094
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	6.3	0.9168
AT2G36100		CASP1	Casparian strip membrane domai...		Lus10021332 [exp]	6.3	0.9107
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10029409 [exp]	6.9	0.9117
AT4G35210			Arabidopsis protein of unknown...		Lus10025122 [exp]	8.8	0.8837
AT2G17080			Arabidopsis protein of unknown...		Lus10014448 [exp]	8.9	0.8849
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	10.6	0.8955
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10019780 [exp]	15.5	0.8970
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10033007 [exp]	15.7	0.8535

Compare expression of checked genes

Lus10012182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.