Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20920 351 / 2e-122 EIF2 BETA, EMB1401, EIF2BETA embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) AT3G07920 188 / 4e-60 Translation initiation factor IF2/IF5 (.1) AT5G01940 140 / 2e-40 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007559 [exp] 455 / 3e-163 AT5G20920 385 / 3e-136 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Lus10007557 [exp] 257 / 4e-86 AT5G20920 192 / 2e-61 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G158400 [exp] 376 / 2e-132 AT5G20920 396 / 7e-141 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.019G131200 [exp] 370 / 4e-130 AT5G20920 399 / 7e-142 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.017G122200 [exp] 46 / 2e-05 AT1G77840 456 / 1e-158 Translation initiation factor IF2/IF5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01873 [flax] [poplar] eIF-5_eIF-2B Domain found in IF2B/IF5
Representative CDS sequence Show only first row Show all	>Lus10012186 pacid=23154963 polypeptide=Lus10012186 locus=Lus10012186.g ID=Lus10012186.BGIv1.0 annot-version=v1.0 ATGGCTGACGAAGAACACGCCGAGATTCCCGAACTCGCTCCATTCGATCCTACCAAGAAGAAGAAGAAGAAGAAAGTCGTGATACAGGATATTGCTGACG AGCCAGTGGAAAAGCTGGCTGAGAAAACTGAATCATTGTCAGTTGCAGATGGGGTTGAAAGCTCGTTTTCGGGTTTGAAAAAGAAGAAGAAGAAGCCCGT TGAAACTAGACTTCTGAATGAAGAAACTGGTGATGGCGAAGAAGATGTGGATGACCATGTGCCAGAAGAAGCTGAAGGGGAAGACGGTGCTGCACTGCAG AACCGTTATCCGTGGGAGAGGAGTGATCGTGATTATTACTATTCAGAGCTTATTGATAGGGTTTACGAGAATTTGCGCGAGAATAATCCGGAGCTTTCAG GAGACAGGCGTAGGACTGTTATGAGGCCTCCACAGGTTCTTCGTGAAGGGACAAAGAAGACTGTGTTTGCAAACTTCATGGACCTTTGCAAGAGCATGCA CAGGCAACCAGACCACGTCATGGCATTCCTGCTCGCTGAGTTGGGAACTAGCGGATCCCTTGATGGTCAGCAAAGGTTGGTTGTGAAAGGACGGTTTGCA CCTAAGAATTTTGAAGGGATCCTCCGAAGATACATCAGTAAGCATCCTCCTTTATTGTTACCCGTGTTTGTGTCTATGATCCGGGAACTAATGTACATGT TTTCAGATGAGTATGTGATCTGTCTCGGGTGCAAGAGTCCAGATACAATCCTGTCCAAGGAGAATCGTCTCTTCTTCCTCCGATGCGAGAAGTGTGGCTC AGGTAGGTCAGTGGCACCCATCAAGGCCGGGTTCGTTGCTCGTGTCGGCCGCCGAAACGCTGGGACATGA
AA sequence Show only first row Show all	>Lus10012186 pacid=23154963 polypeptide=Lus10012186 locus=Lus10012186.g ID=Lus10012186.BGIv1.0 annot-version=v1.0 MADEEHAEIPELAPFDPTKKKKKKKVVIQDIADEPVEKLAEKTESLSVADGVESSFSGLKKKKKKPVETRLLNEETGDGEEDVDDHVPEEAEGEDGAALQ NRYPWERSDRDYYYSELIDRVYENLRENNPELSGDRRRTVMRPPQVLREGTKKTVFANFMDLCKSMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFA PKNFEGILRRYISKHPPLLLPVFVSMIRELMYMFSDEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	0	1
AT1G57720			Translation elongation factor ...		Lus10033213 [exp]	1.4	0.8330
AT3G16780			Ribosomal protein L19e family ...		Lus10023388 [exp]	1.7	0.8351
AT3G25545			unknown protein		Lus10029095 [exp]	3.5	0.8030
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10017293 [exp]	5.5	0.7971
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10029320 [exp]	5.5	0.8183
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10004885 [exp]	6.9	0.7749
AT4G36420			Ribosomal protein L12 family p...		Lus10041783 [exp]	8.2	0.7424
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10016418 [exp]	10.4	0.7423
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010211 [exp]	11.5	0.7720
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Lus10008680 [exp]	13.4	0.7459

Compare expression of checked genes

Lus10012186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.