Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44525 259 / 1e-89 Protein of unknown function (DUF498/DUF598) (.1) AT3G60150 256 / 1e-88 Protein of unknown function (DUF498/DUF598) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007556 [exp] 357 / 3e-128 AT2G44525 262 / 1e-90 Protein of unknown function (DUF498/DUF598) (.1) Lus10007558 [exp] 357 / 3e-128 AT2G44525 262 / 1e-90 Protein of unknown function (DUF498/DUF598) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G179500 [exp] 289 / 2e-101 AT2G44525 265 / 5e-92 Protein of unknown function (DUF498/DUF598) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04430 [flax] [poplar] DUF498 Protein of unknown function (DUF498/DUF598)
Representative CDS sequence Show only first row Show all	>Lus10012187 pacid=23154947 polypeptide=Lus10012187 locus=Lus10012187.g ID=Lus10012187.BGIv1.0 annot-version=v1.0 ATGACTGTGAGGCAACGGGCAGTGACGGCTTTGCCAAAGCTGATACAAAGCCTGCGTAAGGACTGCCCGAGACCTGCTCCGCTACTCTCAGCAACTAATC AATCTACACAGCTCCCATCTCTCAGACGTGCATTCTCTCTTTACGATCAGATCAATCTCATTGATAATGTCCCCGAAGACCAGCTTCGGTTCCAGAATTA TACAGACACTGGATTTACGGTGAATGGGGTACAGTATGAAGGGAGCTTGCTATGCATTGGCAACTTGCTGATGTCGTGGACTCCCAAAACAATCCCGCAA ATCACTCCAGAGAGTTTATCCATCTTCAAAATCGTTCGGCCTATTCCAGAGATCTTGATTCTTGGATGTGGAAGATACATTCAGCCTGTAGATCCTGAAC TCAGGCGGTTCATCCGGTCTACTGGCATGAAGCTAGAGGCAGTTGACTCGAGGAACGCTGCTACAACTTACAACATACTCAACGAGGAAGGACGAATGGT GGCTGTTGCCCTTCTCCCATACGGAGTCTCCTCGTAA
AA sequence Show only first row Show all	>Lus10012187 pacid=23154947 polypeptide=Lus10012187 locus=Lus10012187.g ID=Lus10012187.BGIv1.0 annot-version=v1.0 MTVRQRAVTALPKLIQSLRKDCPRPAPLLSATNQSTQLPSLRRAFSLYDQINLIDNVPEDQLRFQNYTDTGFTVNGVQYEGSLLCIGNLLMSWTPKTIPQ ITPESLSIFKIVRPIPEILILGCGRYIQPVDPELRRFIRSTGMKLEAVDSRNAATTYNILNEEGRMVAVALLPYGVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44525			Protein of unknown function (D...		Lus10012187 [exp]	0	1
AT2G28430			unknown protein		Lus10022580 [exp]	7.9	0.7193
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	13.1	0.6981
AT1G79660			unknown protein		Lus10041631 [exp]	24.9	0.6672
AT1G21900			emp24/gp25L/p24 family/GOLD fa...		Lus10041939 [exp]	26.8	0.6960
AT1G26750			unknown protein		Lus10016383 [exp]	32.2	0.6855
AT5G54750			Transport protein particle (TR...		Lus10006060 [exp]	38.7	0.6774
AT2G16710			Iron-sulphur cluster biosynthe...		Lus10021368 [exp]	39.4	0.6483
AT1G77350			unknown protein		Lus10018864 [exp]	40.1	0.6632
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10016977 [exp]	43.8	0.6602
AT1G67570			Protein of unknown function (D...		Lus10032512 [exp]	43.9	0.6350

Compare expression of checked genes

Lus10012187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.