Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34750 136 / 6e-42 SAUR-like auxin-responsive protein family (.1.2) AT5G10990 120 / 1e-35 SAUR-like auxin-responsive protein family (.1) AT1G19840 115 / 1e-33 SAUR-like auxin-responsive protein family (.1) AT1G75590 114 / 3e-33 SAUR-like auxin-responsive protein family (.1) AT3G43120 75 / 1e-17 SAUR-like auxin-responsive protein family (.1) AT1G56150 72 / 3e-17 SAUR-like auxin-responsive protein family (.1) AT2G24400 74 / 6e-17 SAUR-like auxin-responsive protein family (.1) AT4G34770 72 / 6e-17 SAUR-like auxin-responsive protein family (.1) AT5G20810 71 / 3e-16 SAUR-like auxin-responsive protein family (.1.2) AT4G34760 69 / 8e-16 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034507 [exp] 136 / 9e-42 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1) Lus10026297 [exp] 135 / 3e-41 AT5G10990 125 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10042374 [exp] 134 / 3e-41 AT5G10990 125 / 8e-38 SAUR-like auxin-responsive protein family (.1) Lus10033161 [exp] 133 / 1e-40 AT1G75590 187 / 4e-62 SAUR-like auxin-responsive protein family (.1) Lus10012426 [exp] 119 / 5e-35 AT1G75590 181 / 2e-59 SAUR-like auxin-responsive protein family (.1) Lus10024322 [exp] 84 / 1e-21 AT1G75590 152 / 3e-48 SAUR-like auxin-responsive protein family (.1) Lus10007552 [exp] 71 / 3e-16 AT1G75590 70 / 3e-16 SAUR-like auxin-responsive protein family (.1) Lus10031754 [exp] 70 / 7e-16 AT3G12830 170 / 2e-55 SAUR-like auxin-responsive protein family (.1) Lus10008996 [exp] 67 / 3e-15 AT4G38840 116 / 2e-35 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G164300 [exp] 142 / 5e-44 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1) Potri.009G125900 [exp] 138 / 2e-42 AT5G10990 157 / 5e-50 SAUR-like auxin-responsive protein family (.1) Potri.005G237000 [exp] 137 / 3e-42 AT1G75590 200 / 4e-67 SAUR-like auxin-responsive protein family (.1) Potri.002G024500 [exp] 134 / 5e-41 AT1G75590 194 / 1e-64 SAUR-like auxin-responsive protein family (.1) Potri.006G278100 [exp] 81 / 5e-20 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.008G037900 [exp] 73 / 3e-17 AT2G37030 103 / 2e-29 SAUR-like auxin-responsive protein family (.1) Potri.010G224500 [exp] 72 / 6e-17 AT2G37030 103 / 2e-29 SAUR-like auxin-responsive protein family (.1) Potri.006G070600 [exp] 71 / 3e-16 AT5G18060 61 / 6e-13 SAUR-like auxin-responsive protein family (.1) Potri.018G132400 [exp] 71 / 3e-16 AT3G43120 64 / 2e-13 SAUR-like auxin-responsive protein family (.1) Potri.005G096400 [exp] 70 / 8e-16 AT3G12830 164 / 2e-53 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10012190 pacid=23154927 polypeptide=Lus10012190 locus=Lus10012190.g ID=Lus10012190.BGIv1.0 annot-version=v1.0 ATGTCGAAGTCCAACAAAATCCGCCACATCGTCAGAATCCACCAGATGCTCAAACAATGGCGCCGCAAGGCCCGTTCCTCCGCCGCCTCCTCCTCATCGC CATCCGAAGTACCCGCCGGCCACGTGGCGGTCTACGTGGGCGCCACCTGCCGCCGATTCATCGTCCGGGCGACGTTCTTGAACCACCCGATATTCAATCG AGTCCTGGCGATGGCGGAGGAAGAGTACGGGTTCGAGAATTCCGGGCCGCTCCGGATCCCCTGCGACGAGCGGGAGTTCGAGGAGGTGCTGAAGCTGGTC TCCAGATCTGAATCGACGTCGGTGATCGGACGGTCGAGGAGGCTGGTGAGATTGGAAGACGTCCGTCGGTGTGCGTTTTACGGCGGGGATAAGGCAGTGA TTGGCGGCGGCGGCGGCGGCGGGGAAGCGAGGCCGAGCGACTGA
AA sequence Show only first row Show all	>Lus10012190 pacid=23154927 polypeptide=Lus10012190 locus=Lus10012190.g ID=Lus10012190.BGIv1.0 annot-version=v1.0 MSKSNKIRHIVRIHQMLKQWRRKARSSAASSSSPSEVPAGHVAVYVGATCRRFIVRATFLNHPIFNRVLAMAEEEYGFENSGPLRIPCDEREFEEVLKLV SRSESTSVIGRSRRLVRLEDVRRCAFYGGDKAVIGGGGGGGEARPSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34750			SAUR-like auxin-responsive pro...		Lus10012190 [exp]	0	1
AT1G11860			Glycine cleavage T-protein fam...		Lus10001624 [exp]	6.3	0.8417
AT1G75590			SAUR-like auxin-responsive pro...		Lus10007552 [exp]	14.4	0.7854
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10015531 [exp]	18.8	0.8106
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10013978 [exp]	20.6	0.8214
AT5G51150			Mitochondrial import inner mem...		Lus10032508 [exp]	24.7	0.7971
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10015399 [exp]	25.0	0.8202
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10029448 [exp]	27.3	0.8153
AT2G22730			Major facilitator superfamily ...		Lus10019244 [exp]	29.5	0.7823
AT1G11860			Glycine cleavage T-protein fam...		Lus10001441 [exp]	31.8	0.8023
AT5G08720			unknown protein		Lus10025701 [exp]	33.2	0.8147

Compare expression of checked genes

Lus10012190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.