Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18070 754 / 0 DRT101 DNA-DAMAGE-REPAIR/TOLERATION 101, phosphoglucosamine mutase-related (.1) AT2G41760 263 / 4e-82 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007545 [exp] 1070 / 0 AT5G18070 756 / 0.0 DNA-DAMAGE-REPAIR/TOLERATION 101, phosphoglucosamine mutase-related (.1) Lus10007548 [exp] 779 / 0 AT5G18070 566 / 0.0 DNA-DAMAGE-REPAIR/TOLERATION 101, phosphoglucosamine mutase-related (.1) Lus10007544 [exp] 426 / 4e-144 AT2G41760 271 / 9e-93 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G146900 [exp] 872 / 0 AT5G18070 750 / 0.0 DNA-DAMAGE-REPAIR/TOLERATION 101, phosphoglucosamine mutase-related (.1) Potri.006G051500 [exp] 287 / 5e-91 AT2G41760 280 / 1e-96 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02878 [flax] [poplar] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [flax] [poplar] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CL0125 [flax] [poplar] Peptidase_CA PF09764 [flax] [poplar] Nt_Gln_amidase N-terminal glutamine amidase CL0125 [flax] [poplar] PF02880 [flax] [poplar] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CL0125 [flax] [poplar] PF00408 [flax] [poplar] PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012191 pacid=23154897 polypeptide=Lus10012191 locus=Lus10012191.g ID=Lus10012191.BGIv1.0 annot-version=v1.0 ATGGCGACGGCAGATACGGAAGCGACGAGCAGCAGCAGCGGAACCGTTTCAGAGGTCATCTACACTCCGTATTACTGCGAGGAGAACGTGTACTTTCTCT GTAAGAAGCTCAGCGAAAACGGGAAGACGAACAAGGATGGATCTGATCTTTACGCTGTGTTCATCTCCAATGAGAAGAAGCAGATTCCGCTTTGGAATCA GAAGGCTAGTACACGAGCAGATGGGATCGTGCTGTGGGATTACCATGTCATATGCATCCAGGCGAATTTGGCAGTGTTTGTGCAGAAGAAAAGAGACGAT GATTCTTCTTCAGCATTGGTATGGGACCTGGATTCCACTCTTCCATCTCCTTCGCCCCTTGATACGTATCTGTCTGAGACGATGAGGCCATCGTTCGAGC TCTTTTCCGACTTTCAGAGGCTGTATCGGGTTGTGCATGCTCCGTTGTTTCTCCGTGAATTCGCATCTGACAGAAGGCACATGAAAGATTCTGCTGGTAA CTGGATCAATCCACCTCCTTCGTATGAACCCATTGTTGCTAAAGATGGAAGTACTCATAACCTGAATGAGTACATGGATATCAAAGCACCAACTGAAGCA ACAACAGACGAGTTGTTCGAGATGGCAGCGAGTCAAGGTCAGAAGCATGGGGTGATTATAAAGGAGACTCAGCTCGAGGAAAGCGTACGATCCAGAGGCC AGACCTGCAACTCTGCTTCAGTTCTAGCTAGTCCTCTTCTCCCATCTCTCTCTCTCTCTCTCGGTCTCTCCATTACTCGTCTCCCAGCTTCATCAGCCCG CAATCAGGTGGAGTTATATAGTTCAACTGCAATCGAATCAAGTCATTTTAAGTCCAGTCAGGCGATCAGAATTGATTACTCTAAGAGTCTAAACTACTTG CAGCTGAATTACCAATTGACCAGAAATCTGCCATGGACGAGCATCAGAAGTCTCTCATTCTGTCTTCCTCCTCTTGCTTCCCTCCCCCTCAAGGCATTCC ATTTTGCTACCTCACTTCTAACTTCATTTTCCACTACAAGTCTTCATCCCCTGATCAACTGCTTTCTTTCATTTCCCCCCGCAGGAGTGAGGCTATCTTA TGGGACGGCCGGATTCAGAGCCGACGCCTCGATTCTCCAATCCACGGTTTTCCGGATTGGGATCCTGGCCGCACTTCGATCCCTCAAGACGCAATCGGTG ATCGGATTGATGATCACCGCTTCCCACAACCAAGTCAGCGACAATGGGATCAAAATCGCCGACCCTAGTGGTGGAATGCTCACTCAGGAATGGGAGCCGT TCGCTGACTCCATCGCCAATGCCCCAACATCGCAGGAGCTGCTGCAATTGGTGGAGGAATTTGTGAAGAACGAAGGAATTCGCTTTGATGGACCTCGAAA TGTGGAGGTACTCCTGGGGAGAGACACCAGGCCCAGCGGCGAATCTCTTCTTGAAGCTGCAAAACAAGGAATTTGTTCAATTGTTGGAGCCAATGTTATT GACATGGGGATTGTGACAACTCCGCAGCTTCATTGGATGGTTCGTGCTAAAAATAAGGGTTTGAAAGCAACTGAGCTTGATTACTTTGAACAACTTTTAG CCTCGTTCAGGTGCTTGCTTGATCTGATTCCAAGCGAAAACAAAGTGAACAAGGCTGATAACAAGTTGGTGGTGGATGGAGCTAATGGGGTTGGGGGAGA GAAGCTTGAAGGTTTAGCAAAGTCTTTGGATGGTTCGAATATTGAAATACGTAATTCTGGGAAAGGGGTGCTAAACGAAGGAGTTGGTGCTGATTATGTG CAGAAAGAGAAGATTCTTCCGCTGGAATTTGGTACTAAAGATGTTGGGACAAGATGTGCAAGTTTGGACGGAGATGCTGACCGGCTTGTGTATTTCTCAG TGCCTTCTGAAAATAGTAACAAAGTTGAGCTTGTAGATGGGGACAAAATTCTATCTCTGTTTGCTGTATTCATCAAGAGTCAGTTAAGCATATTGAATGA GTCGGAAGATACTTACCAGGCTCGCCTTGGTGTGGTACAAACAGCTTATGCTAACGGAGCATCGACTAATTACCTCAGACAATTAGGTCTGGAAGTTGTC CTCACCCCAACTGGAGTGAAATACCTGCATGAAAAAGCAGCACACTATGATGTCGGAATCTATTTCGAAGCAAATGGACATGGCACCATCCTGTTCTCAG AAAGCTTCTTGTCGTGGTTAGAAGCTAAGAATAACGAGATTGCTTCCAAATCTAAAGGCTCTGAAGAGCATAAAGCTGTATTAAGACTGTTGGCGGTTAG TAATTTGATCAACCAAGCCGTTGGAGATGCTTTAAGTGGGTTGCTCTTGGTGGAAGCTATCTTACTGCACATGGGGTGGTCGATATGCAACTGGAACGAG CTTTACCAAGATTTGCCTAGCAGGCAGCTTAAGGTCAAAGTTGTAGATAGAACTGCTGTGAAAACAGCTAATGCAGAGACTGTTGCTGTGGAGCCACCTG GAATTCAAGAAGCTATTAATGCCGAAACTGCGAAATATCCAAACGGACGATGTTTCATAAGGCCTTCTGGTACCGAGGATGTGCTTCGAGTATACGCAGA GGCATCGACACAGGAAGCAGCAGATAGCCTTGCCAACTCCGTGGGCGGAATCGTGGACAGATTCCTAGGATCTGGAGGCAACTAA
AA sequence Show only first row Show all	>Lus10012191 pacid=23154897 polypeptide=Lus10012191 locus=Lus10012191.g ID=Lus10012191.BGIv1.0 annot-version=v1.0 MATADTEATSSSSGTVSEVIYTPYYCEENVYFLCKKLSENGKTNKDGSDLYAVFISNEKKQIPLWNQKASTRADGIVLWDYHVICIQANLAVFVQKKRDD DSSSALVWDLDSTLPSPSPLDTYLSETMRPSFELFSDFQRLYRVVHAPLFLREFASDRRHMKDSAGNWINPPPSYEPIVAKDGSTHNLNEYMDIKAPTEA TTDELFEMAASQGQKHGVIIKETQLEESVRSRGQTCNSASVLASPLLPSLSLSLGLSITRLPASSARNQVELYSSTAIESSHFKSSQAIRIDYSKSLNYL QLNYQLTRNLPWTSIRSLSFCLPPLASLPLKAFHFATSLLTSFSTTSLHPLINCFLSFPPAGVRLSYGTAGFRADASILQSTVFRIGILAALRSLKTQSV IGLMITASHNQVSDNGIKIADPSGGMLTQEWEPFADSIANAPTSQELLQLVEEFVKNEGIRFDGPRNVEVLLGRDTRPSGESLLEAAKQGICSIVGANVI DMGIVTTPQLHWMVRAKNKGLKATELDYFEQLLASFRCLLDLIPSENKVNKADNKLVVDGANGVGGEKLEGLAKSLDGSNIEIRNSGKGVLNEGVGADYV QKEKILPLEFGTKDVGTRCASLDGDADRLVYFSVPSENSNKVELVDGDKILSLFAVFIKSQLSILNESEDTYQARLGVVQTAYANGASTNYLRQLGLEVV LTPTGVKYLHEKAAHYDVGIYFEANGHGTILFSESFLSWLEAKNNEIASKSKGSEEHKAVLRLLAVSNLINQAVGDALSGLLLVEAILLHMGWSICNWNE LYQDLPSRQLKVKVVDRTAVKTANAETVAVEPPGIQEAINAETAKYPNGRCFIRPSGTEDVLRVYAEASTQEAADSLANSVGGIVDRFLGSGGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10012191 [exp]	0	1
AT1G21780			BTB/POZ domain-containing prot...		Lus10042717 [exp]	10.9	0.8553
AT4G31860			Protein phosphatase 2C family ...		Lus10042416 [exp]	12.8	0.8431
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10010471 [exp]	15.2	0.7660
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	20.0	0.8284
AT5G47310			PPPDE putative thiol peptidase...		Lus10004372 [exp]	21.7	0.7904
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10040213 [exp]	22.1	0.8477
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012238 [exp]	23.7	0.8205
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10013027 [exp]	24.5	0.8176
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	24.8	0.8264
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10038334 [exp]	29.9	0.8306

Compare expression of checked genes

Lus10012191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.