Plant FIBer expression Database

Lus10012192 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41750 167 / 2e-51 DTW domain-containing protein (.1)
AT5G54880 45 / 1e-05 DTW domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G051600
[exp]
200 / 2e-64 AT2G41750 204 / 1e-65 DTW domain-containing protein (.1)
Potri.001G423900
[exp]
49 / 6e-07 AT5G54880 274 / 3e-89 DTW domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03942 DTW DTW domain
Representative CDS sequence
>Lus10012192 pacid=23154923 polypeptide=Lus10012192 locus=Lus10012192.g ID=Lus10012192.BGIv1.0 annot-version=v1.0
ATGGAATCGAAATCGGAGATCCAGTCGGCGGAGCAACAACGGCAGAGGCGGACAATTTGCGACGGATGCCACCGTCCGACGGCAGTGTGCCTCTGCCACG
TCATCCCCAATCCACCGATCCAAACCTCAACACGGATCGTAATCCTGCAGCACCCGCATGAGTCACGCCACAAGCTGACCACGACGCCGCTCATCACCAG
ATCCCTCTCCAACGCCGCCTCCACGGTGGCGCGTAGGCTAACTCGTGATCCGCTCCGCCGCCTAACGGGCGACTACGATCATCTCCCGCTCCCGCGGAAA
ATCTTCTACCTGTTCCCGCCATCTCCCTCCACGCCTTCGGTCACGCTGTCGGAAGTAAAGCGATCTCTGTCGGATCAGAACGGCGTCGTGCTGATCGCAT
TCGACGCGACGTGGAAGCACGCGAGGGAGCTGGTTAGGGCTAGCGAGGTTAAGGCTAGCGAGGGGCTGTTGAGCGAGATCGCGACGAGAGTGAGCTTGGA
CGGGTTCGATAGCGAGGCTGAAGGAGGGAGCATATATGAGTCGGAGCTGGTTTTGAGAAAGGAGCCGTGCGGAGGATGTGTGAGTACGCTGGAGGCGGTA
GCACGGTGGCTGGGGGAGGCGGAGGACGGCGGTGGAGCAACGACGGCGGAGGTTTGA
AA sequence
>Lus10012192 pacid=23154923 polypeptide=Lus10012192 locus=Lus10012192.g ID=Lus10012192.BGIv1.0 annot-version=v1.0
MESKSEIQSAEQQRQRRTICDGCHRPTAVCLCHVIPNPPIQTSTRIVILQHPHESRHKLTTTPLITRSLSNAASTVARRLTRDPLRRLTGDYDHLPLPRK
IFYLFPPSPSTPSVTLSEVKRSLSDQNGVVLIAFDATWKHARELVRASEVKASEGLLSEIATRVSLDGFDSEAEGGSIYESELVLRKEPCGGCVSTLEAV
ARWLGEAEDGGGATTAEV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G41750 DTW domain-containing protein ... Lus10012192
[exp]
0 1
AT2G43080 AT-P4H-1 P4H isoform 1 (.1) Lus10035434
[exp]
6.2 0.8755
AT1G77410 BGAL16 beta-galactosidase 16 (.1) Lus10028538
[exp]
12.2 0.8790
AT3G10915 Reticulon family protein (.1.2... Lus10029041
[exp]
13.6 0.9059
Lus10025421
[exp]
13.9 0.9056
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Lus10025534
[exp]
15.4 0.8445
AT2G26430 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3... Lus10036509
[exp]
22.4 0.8943
AT3G16520 UGT88A1 UDP-glucosyl transferase 88A1 ... Lus10027542
[exp]
23.1 0.8421
Lus10029790
[exp]
23.1 0.8630
AT5G57500 Galactosyltransferase family p... Lus10000407
[exp]
25.0 0.8690
AT5G66040 STR16 sulfurtransferase protein 16 (... Lus10012566
[exp]
25.9 0.8806

Lus10012192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.