Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41820 1205 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 475 / 1e-151 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 473 / 3e-151 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 470 / 5e-150 Leucine-rich repeat protein kinase family protein (.1) AT1G34420 430 / 3e-136 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G48940 429 / 4e-134 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 420 / 1e-131 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT3G24240 419 / 3e-130 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 416 / 2e-128 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 413 / 2e-127 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007543 [exp] 1445 / 0 AT2G41820 1130 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011761 [exp] 483 / 2e-156 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10009429 [exp] 452 / 1e-144 AT1G34420 809 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000509 [exp] 417 / 2e-130 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027221 [exp] 409 / 1e-127 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10036251 [exp] 409 / 1e-125 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10011576 [exp] 398 / 5e-125 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000814 [exp] 400 / 1e-124 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011756 [exp] 403 / 2e-124 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G051700 [exp] 1259 / 0 AT2G41820 1343 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G055400 [exp] 1256 / 0 AT2G41820 1311 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G025500 [exp] 470 / 5e-150 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G051300 [exp] 464 / 1e-147 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G084800 [exp] 457 / 1e-146 AT1G34420 753 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G174900 [exp] 460 / 4e-146 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 454 / 5e-144 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G114200 [exp] 449 / 1e-143 AT1G34420 793 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G053400 [exp] 447 / 2e-141 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 413 / 3e-129 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10012193 pacid=23154901 polypeptide=Lus10012193 locus=Lus10012193.g ID=Lus10012193.BGIv1.0 annot-version=v1.0 ATGGCGATCAACACTGAGCTCCAAATTCCAGGCTGGGGAGGAACAAGCAACAACGGTAGCACTGACTACTGCAACTGGTTTGGTATCTTCTGCAGCTCAA CAAACCACTCAGTAATTGGACTAGGTCTTCCACGCCTAGGCCTCAAAGGTAACATTGCTCCAATCTCAAACCTCAAATCCCTAAAGCGACTTGATCTCTC TGGAAACAACTTCAACGGTCCAATCCCTAAAGAGATTGGGGAATTATCTCACTTGGAGCTTCTTGACTTGTCTGTCAACAAGTTTGATGGATTCATCCCT ACTGAACTTGGTTCCCTCACAATGCTCAAGTCACTCAACATTTCCAACAACTTGCTTGTTGGAAAGATTCCTGATGAGCTTCAAAAAGTTGAGAAGTTGG AAGAGCTTCAGATTTCAAGTAACAATTTGAATGGTACAATTCCATTATGGATAGGGAATCTCACTCAGTTGAAGGTTTTCACGGCCTATGAGAATTTGTT AACCGGCGAGATTCCGGTCCCCAACAATTTAGGGTTCTTCTTCCCTGAGCTGAAGCTGCTGAATCTCCACTCTAATCAGCTTTCAGGGTTGATCCCAGAT AAGTTGTTTCTTCATGGAAAGTTGGAATCTTTGATTCTGACTCAGAACAGATTCAAAGGTGAGATTCCTGATTCAATTGGGAAATGTAGGAGTCTGTCCA GTATAAGGATTGGGAACAATGAACTTATTGGAGGGATTCCAATCACAATTGGTAATCTTACCAGCTTGACTTACTTTGAAGCAGACAGTAATCATTTATC CGGTGACATCGTTTCTGAGTTTTCGAAATGCTCGAATCTTACCTTACTGAACTTGGCCTCGAACGGTTTCACTGGCGTGATCCCGCTCGACCTGGGACAG CTCGAGAATCTCCAGGAGCTGATACTCTCGGACAATAGTTTGTACGGAGACATCCCTAAGTCGATCATAGGGTGCAGAAGTCTCAACAAGCTCGTCCTCA CGAATAATCGGATCAATGGCACGATACCGGTGGAGATCTGCAGCATTTCGAGGCTGCAGTACTTGCTCCTGGGTCAGAACTCGATCCGAGGCGAGATACC TCATGAGATTGGGAGCTGTTCGAAGCTGCTCGAGTTCCAAATCGGTGGTAACTACTTGGTCGGAACGATTCCACCCGAAATCGGCCACATCAGGAACTTA CAGATTGCATTGAACTTGAGCTTCAACCATCTCCATGGATCGGTTCCGTCCGAGTTGGGGAAGCTTGACAAGCTGGTTTCTTTGGATGTGTCGAATAACC AGTTATCTGGTGATATCCCACTTTCATTGAAAGGAATGCTGAGCTTGATTGAGGTCAATTTTTCAAACAATCTGCTCACTGGTGAAGTCCCTACTTTCGT ACCGTTCCAAAAGAGTCCGAATTCGAGCTTTACAGGGAATAAGGGACTCTGTGGTGAGCCGTTGGGATCAATTTGTAGAAACTCATACGCAATTGGTGAT AATAATGAAAGTTATTACCATCATAGAGTTTCTCTCAGGATTGTAATGGCTGTCATCGGTTCCGGTTTGGCCGTGTTCGTATCAGTAACCGTGGTTGTTC TTCTGTTTATGATGAGGGAGAGGCAGGAAAAAAAAGAAGCCAAATCAGTCGATTTTGACGAAAACGAAGAACCAGCGAACGAGAAGCCGACGATATTAGC CAGCAATATCTTCGTCGACAACTTGAGACAGGCCATTGATGTTGAGTCTGTAGTGAAATCTACGCTAAAGGACTCGAACAAGCTCAGCAGCGGAACGTTC AGCACGGTTTACAAAGCGGTGATGCCTTCGGGGATGTCATTATCGGTACGGAAGCTGAAATCAATGGACCGGACCATCGTTCATCATCAGGGCAAGATGA TTAGGGAGCTCGAGAGGCTAAGCAAGCTCTCACACGATAATCTCGTGCAGCCCATCGGATTCGTGGTTTACGAGGACGTCGCTCTCTTGCTCCATAAATA CTTGCCGAACGGTACGTTAGGGCAAATGCTCCACGAATCGAGCAAGCTTAGTGATTATAAGCCTGACTGGCCGACGAGGCTCTCCATCGCGACAGGAGTC GCGCGAGGATTGGCTTTCCTTCACAATGTGGCGATCATCCACCTCGATATATCGTCCGGGAATGTCCTCTTGGATGCTGATTTCCAGCCCGTGCTTGGCG AGATCGAGATATCGAAACTCCTCGATCCGTCCAGAGGCACTGCAAGCATCAGCGCTGTTGCTGGATCATTTGGTTATATTCCTCCGGAATATGCGTACAC GATGCAAGTTACGGCGCCTGGGAATGTGTACAGCTACGGAGTAGTTCTGCTGGAGATCCTCACGACCAGGCTACCGGTGGAGGAAGAATTTGGCGAAGGG GTCGATCTGGTGAAGTGGGTTCATGGCGCGCCCAGGAGAGGTGAGACTCCCGAGCAGATACTCGATGCAAAGCTTAGTACAGTCTCATTCGCGTGGAGGA GAGAAATGGTTGCAGTTCTTAAGGTAGCCTTGCTATGCACAGACGGCACCCCGGCTAAAAGGCCAAAGATGAAGAAGGTAGTGGAGATGCTTGAAGAGAT CACACAAACAAACTGA
AA sequence Show only first row Show all	>Lus10012193 pacid=23154901 polypeptide=Lus10012193 locus=Lus10012193.g ID=Lus10012193.BGIv1.0 annot-version=v1.0 MAINTELQIPGWGGTSNNGSTDYCNWFGIFCSSTNHSVIGLGLPRLGLKGNIAPISNLKSLKRLDLSGNNFNGPIPKEIGELSHLELLDLSVNKFDGFIP TELGSLTMLKSLNISNNLLVGKIPDELQKVEKLEELQISSNNLNGTIPLWIGNLTQLKVFTAYENLLTGEIPVPNNLGFFFPELKLLNLHSNQLSGLIPD KLFLHGKLESLILTQNRFKGEIPDSIGKCRSLSSIRIGNNELIGGIPITIGNLTSLTYFEADSNHLSGDIVSEFSKCSNLTLLNLASNGFTGVIPLDLGQ LENLQELILSDNSLYGDIPKSIIGCRSLNKLVLTNNRINGTIPVEICSISRLQYLLLGQNSIRGEIPHEIGSCSKLLEFQIGGNYLVGTIPPEIGHIRNL QIALNLSFNHLHGSVPSELGKLDKLVSLDVSNNQLSGDIPLSLKGMLSLIEVNFSNNLLTGEVPTFVPFQKSPNSSFTGNKGLCGEPLGSICRNSYAIGD NNESYYHHRVSLRIVMAVIGSGLAVFVSVTVVVLLFMMRERQEKKEAKSVDFDENEEPANEKPTILASNIFVDNLRQAIDVESVVKSTLKDSNKLSSGTF STVYKAVMPSGMSLSVRKLKSMDRTIVHHQGKMIRELERLSKLSHDNLVQPIGFVVYEDVALLLHKYLPNGTLGQMLHESSKLSDYKPDWPTRLSIATGV ARGLAFLHNVAIIHLDISSGNVLLDADFQPVLGEIEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVEEEFGEG VDLVKWVHGAPRRGETPEQILDAKLSTVSFAWRREMVAVLKVALLCTDGTPAKRPKMKKVVEMLEEITQTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41820			Leucine-rich repeat protein ki...		Lus10012193 [exp]	0	1
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10008190 [exp]	3.9	0.8574
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10042854 [exp]	6.9	0.8662
AT4G23460			Adaptin family protein (.1)		Lus10024654 [exp]	9.6	0.8655
AT2G41820			Leucine-rich repeat protein ki...		Lus10007543 [exp]	12.7	0.8205
AT3G16060			ATP binding microtubule motor ...		Lus10011449 [exp]	12.8	0.8584
AT3G26370			O-fucosyltransferase family pr...		Lus10036875 [exp]	16.2	0.8462
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	17.0	0.8457
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10016533 [exp]	17.7	0.8150
					Lus10010435 [exp]	19.5	0.8338
AT5G51300			splicing factor-related (.1.2....		Lus10038932 [exp]	19.9	0.8411

Compare expression of checked genes

Lus10012193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.