Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00860 115 / 2e-35 AT0ZI1, ATOZI1 Arabidopsis thaliana ozone-induced protein 1, Protein of unknown function (DUF1138) (.1) AT1G01170 109 / 1e-32 Protein of unknown function (DUF1138) (.1), Protein of unknown function (DUF1138) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007542 [exp] 146 / 2e-47 AT4G00860 129 / 4e-41 Arabidopsis thaliana ozone-induced protein 1, Protein of unknown function (DUF1138) (.1) Lus10042373 [exp] 122 / 8e-38 AT1G01170 119 / 5e-37 Protein of unknown function (DUF1138) (.1), Protein of unknown function (DUF1138) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G051900 [exp] 118 / 3e-36 AT1G01170 125 / 2e-39 Protein of unknown function (DUF1138) (.1), Protein of unknown function (DUF1138) (.2) Potri.016G055200 [exp] 114 / 2e-34 AT1G01170 120 / 2e-37 Protein of unknown function (DUF1138) (.1), Protein of unknown function (DUF1138) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06592 [flax] [poplar] DUF1138 Protein of unknown function (DUF1138)
Representative CDS sequence Show only first row Show all	>Lus10012194 pacid=23154942 polypeptide=Lus10012194 locus=Lus10012194.g ID=Lus10012194.BGIv1.0 annot-version=v1.0 ATGTCGGGCAAGTACATCATGGGTGCTCTAGCTGGATCATTTGTGGTCGCCTACGTGTGCGACAGGATTATATCCGACGAGAAGATATTCGGCGGTGAGT TCCACTCTCCCTATGTTCCGTATGCTTTTTCTTGCTCATGGCTCTTGATGTATCTTACCAATTTTGCCCGTTCCATCTCAGGATCCACACCAGGAACAGT CTCGAACAAGCAATGGGGGGAGGAGACTGACAAGAGGTTCCAGGCATGGCCACGCACTGCCGGTCCACCAGTCGTGATGAACCCCATCAGCCGCCAGAAC TTCATCGTCAAGTCCCGAGATTGA
AA sequence Show only first row Show all	>Lus10012194 pacid=23154942 polypeptide=Lus10012194 locus=Lus10012194.g ID=Lus10012194.BGIv1.0 annot-version=v1.0 MSGKYIMGALAGSFVVAYVCDRIISDEKIFGGEFHSPYVPYAFSCSWLLMYLTNFARSISGSTPGTVSNKQWGEETDKRFQAWPRTAGPPVVMNPISRQN FIVKSRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00860		AT0ZI1, ATOZI1	Arabidopsis thaliana ozone-ind...		Lus10012194 [exp]	0	1
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10001198 [exp]	3.2	0.7991
					Lus10004134 [exp]	5.2	0.7854
AT5G11280			unknown protein		Lus10002898 [exp]	7.2	0.8302
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037520 [exp]	11.5	0.8184
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034975 [exp]	11.7	0.8036
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028370 [exp]	14.0	0.8047
AT3G03100			NADH:ubiquinone oxidoreductase...		Lus10007886 [exp]	26.5	0.7304
AT4G18372			Small nuclear ribonucleoprotei...		Lus10042823 [exp]	27.7	0.7618
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10016215 [exp]	29.7	0.7928
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038757 [exp]	39.2	0.6658

Compare expression of checked genes

Lus10012194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.