Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41835 348 / 2e-121 C2H2ZnF zinc finger (C2H2 type, AN1-like) family protein (.1) AT3G57480 303 / 4e-104 C2H2ZnF zinc finger (C2H2 type, AN1-like) family protein (.1) AT3G28210 136 / 2e-39 SAP12, PMZ STRESS-ASSOCIATED PROTEIN 12, zinc finger (AN1-like) family protein (.1) AT5G48205 101 / 4e-26 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007540 [exp] 524 / 0 AT2G41835 354 / 1e-123 zinc finger (C2H2 type, AN1-like) family protein (.1) Lus10039448 [exp] 137 / 8e-40 AT3G28210 202 / 1e-66 STRESS-ASSOCIATED PROTEIN 12, zinc finger (AN1-like) family protein (.1) Lus10039469 [exp] 132 / 1e-37 AT3G28210 208 / 4e-69 STRESS-ASSOCIATED PROTEIN 12, zinc finger (AN1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052200 [exp] 393 / 7e-139 AT2G41835 360 / 6e-126 zinc finger (C2H2 type, AN1-like) family protein (.1) Potri.011G138500 [exp] 131 / 5e-38 AT3G28210 199 / 4e-66 STRESS-ASSOCIATED PROTEIN 12, zinc finger (AN1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01428 [flax] [poplar] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Lus10012196 pacid=23154975 polypeptide=Lus10012196 locus=Lus10012196.g ID=Lus10012196.BGIv1.0 annot-version=v1.0 ATGGGTACGCCGGCGTTCCCAGATCTCGGAAAGCACTGCTTCGTCGAAGACTGCAAGCAACTCGACTTTCTTCCTTTCACTTGCGATCGATGCCGCCAGG TATTCTGCCTGCAGCACCGAAGCTACATCAAGCACAACTGCCCAACAGCCGATAAGAACGATGTCACTGTCGTCGTCTGTCCCCTTTGTGCCAAGGGAGT TCGACTAATTGGCAACGAAGACCCCAACATCTCATGGGAAACCCACGTCAACACCGAATGCGACCCATCAAACTACGAAAAAGTCACCAAGAAACCGAAA TGTCCCGTCAAGGGCTGTAGAGAATCCCTCACATTCTCCAACACAATCAAATGCCGAGACTGCACCAAGGACCACTGCCTAAAGCATCGTTTCGGCCTCG ACCACAGCTGCCCGGGACCCAAGAAACCCGACCCAGGTTTCCAGTTCATGAGCCTTCTCAACCGGAGCAACACGCAAAACACGAAAACCAAACGACCTTC CACTTCTACAAGTAGAAGCTGGACTTCGAACTTCTTCAGTGCAGCTGAAGCCGGAGTTTCGAAACTTAGCAGGGATTTGAGTCAAGTTTGGCAGACGACA CCTGGCATTGTCGGGGCAAGCAGCAGCAGAGGAGGAGGCGATGAGGTGTGTCCGCAATGTGGTTCGAAGTTTGCGTCGGTGACGAGTCTGGTGGAGCATG TGCAGAAGGTCCATGAGAAGAAGCAGCAGTCTAGAGTGTTGAAGTTGCCTGTAGATGTTTGTCCAAAGTGTAGTAAAGGTTTCCGTGATCCTGTGGACCT TGTGGCGCATGTAGAAAGAGACCATGGAGGTACCTCAAAGGCTTAG
AA sequence Show only first row Show all	>Lus10012196 pacid=23154975 polypeptide=Lus10012196 locus=Lus10012196.g ID=Lus10012196.BGIv1.0 annot-version=v1.0 MGTPAFPDLGKHCFVEDCKQLDFLPFTCDRCRQVFCLQHRSYIKHNCPTADKNDVTVVVCPLCAKGVRLIGNEDPNISWETHVNTECDPSNYEKVTKKPK CPVKGCRESLTFSNTIKCRDCTKDHCLKHRFGLDHSCPGPKKPDPGFQFMSLLNRSNTQNTKTKRPSTSTSRSWTSNFFSAAEAGVSKLSRDLSQVWQTT PGIVGASSSRGGGDEVCPQCGSKFASVTSLVEHVQKVHEKKQQSRVLKLPVDVCPKCSKGFRDPVDLVAHVERDHGGTSKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10012196 [exp]	0	1
AT2G46080			unknown protein		Lus10018821 [exp]	2.6	0.8688
AT1G77480			Eukaryotic aspartyl protease f...		Lus10018146 [exp]	2.8	0.8833
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	5.5	0.8908
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	5.7	0.8326
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10021534 [exp]	5.7	0.8527
AT3G62260			Protein phosphatase 2C family ...		Lus10009993 [exp]	7.1	0.8382
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10018408 [exp]	9.0	0.8337
AT1G18210			Calcium-binding EF-hand family...		Lus10031345 [exp]	9.6	0.8751
					Lus10025243 [exp]	9.8	0.8766
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10031029 [exp]	11.0	0.8604

Compare expression of checked genes

Lus10012196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.