Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05170 1733 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT4G32410 1473 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT2G25540 1439 / 0 CESA10 cellulose synthase 10 (.1) AT5G44030 1414 / 0 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT5G17420 1405 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G64740 1364 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT5G09870 1359 / 0 CESA5 cellulose synthase 5 (.1) AT2G21770 1338 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT4G39350 1335 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT4G18780 1283 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007538 [exp] 2158 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10039607 [exp] 1712 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10028597 [exp] 1506 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 1497 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10002939 [exp] 1347 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 1345 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1340 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1285 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10007296 [exp] 1285 / 0 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G054900 [exp] 1860 / 0 AT5G05170 1754 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G052600 [exp] 1850 / 0 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.009G060800 [exp] 1747 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.001G266400 [exp] 1740 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G251900 [exp] 1518 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G029400 [exp] 1515 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G103900 [exp] 1435 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G181900 [exp] 1433 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.013G019800 [exp] 1427 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 1407 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10012198 pacid=23154932 polypeptide=Lus10012198 locus=Lus10012198.g ID=Lus10012198.BGIv1.0 annot-version=v1.0 ATGGAGCTCGAAGCCGATCATGGCGGGGTCAGTTCTCCCTCCCCCTTCACTTTTACAACATTTCAACTGTTTCTTGCTCACTTCATTCTCACTGCTATTC GCGACATCGCCGATCCAGTCCTTGTTTACTCCACCAAGAACGTGAAGCAGCAGGTGTGCCAGATCTGCAGCGATGACATTGGGAAGACTTCGGATGGGGA ACCTTTCCTTGCTTGCCATGTCTGTGCATTTCCTGTATGCCGTCCTTGCTATGAGTATGAACGGAAAGATGGGACTCAGTCATGTCCGCAGTGCAAAACC AAATACACCAGGCATAAAGGTAGCCCTGCAATTCACGGGGAGCAGGTGGATGATGGTGAGTTTAAGGACGCCACCAAGTCGACGGCTCAACCAGGAGGGA TTCAAGATGAGAAGCATAAGATAGACCGTATGTTGGGTTGGGAGTCTGGCTCTGGCCGTAAAGACTATGTTGCTCCCTCGTATGAGAATCTTACTCACAT CCCTTATGCAGCCAGTCGACCATCGATGTCTGGGGAGCTCTCTGCTGCATCTCCTGGACGTTACTCTATGGCCTCTCCTGAAAGTGGCAGCAGAGCAACC ATTAGACTGGGAGATCAGCAAAGGGAATATGGCTCTGGAGGTTTCGGAAATGTAGCTTGGAAAGAGAGAATTGATGGTTGGAAGATGAAGCCAGAAAAAA ATACAGCTCCACCAAGTGTTAGCAATGCACCTTCGGAAGGCAGGGGTGGTGTCGATTTTGATGCCAGTACTGATATTCTTATGGATGACTTGCTAAATGA TGAAACTCGCCAACCGCTCTCAAGGAAGGTTCCGATTTCTTCATCTAAAATCAATCCATACCGAATGGTCATTGTATTGCGGCTTATCATCCTTTGCATT TTCTTTCACTACCGTCTCACAAACCCTGTCAGAGATGCCATTCCCTTGTGGTTGATTTCTGTTATTTGTGAGATTTGGTTTGCGGTATCATGGATATTGG ATCAGTTCCCGAAATGGTTCCCTGTGAACCGGGAGACATATCTTGACCGGTTATCCCTCAGATATGAAAAAGAAGGAGAGCCATCTCAATTAGCTTCTGT TGACATCTTTGTCAGTACGGTGGACCCATTGAAAGAACCTCCGATCGTCACAGCCAATACAGTACTGTCTATTCTTGCAGTAGATTATCCAGTGGACAAG GTTTCTTGCTATGTTTCAGATGATGGAGCTGCTATGTTGAGTTTTGAATCCCTTGCTGAAACAGCAGAGTTTGCTAGAAAATGGGTTCCTTTCTGCAAGA AATATAACATCGAACCAAGAGCTCCTGAGTTCTATTTCTCCCAGAAAATTGACTATTTGAAAGATAAGGTCCAGCCATCTTTTGTCAAAGACCGAAGATC AATGAAGAGAGAATACGAAGAATTCAAGATTCGTGTTAATGGCCTTGTAGCCAAGGCACAGAAGGTTCCCGAGGAAGGATGGTTCATGCAAGATGGTACG CCTTGGCCCGGTAACAATACCAGAGATCATCCAGGGATGATTCAGGTTTTCCTTGGCCACAGTGGAGGCCTTGACAGTGATGGCAATGAACTTCCACGGC TGGTATATGTATCTCGTGAGAAACGTCCTGGTTTTCAACATCACAAGAAGGCCGGTGCCATGAATTCCCTTGTCCGAGTTTCTGCCGTTTTGACCAATGG GCCGTTCTTGCTAAATCTTGATTGTGATCATTACATAAATAACAGCAAGGCTCTGAGAGAAGCTATGTGTTTCCTAATGGATCCTAACCTTGGAAGACAA GTGTGTTATGTCCAGTTCCCACAGAGATTTGATGGGATTGATAAAAATGATCGGTATGCCAATCGTAACACCGTCTTCTTCGATATGAATTTGAGAGGTT TGGATGGTATCCAAGGACCAGTGTATGTGGGCACGGGATGTGTTTTCAATAGAACAGCATTGTATGGCTATGAGCCCCCCATTAAGGCGAAGCATACAAA ACCAGGGTTCTTATCTTCATGCTTCGGTGGTTCCAGAAAGAAGAGTTCCAAATCAAGCAAAAAGGACTCAAAGAAGAAGTCCAGCAGGCATGTGGACCCT ACTGTCCCAGTATTTAATCTTGAAGATATAGAAGAAGGGGTTGAAGGAGCTGGATTCGATGACGAGAAGTCACTGCTTATGTCTCAAATGACACTAGAGA AGAGATTTGGTCAGTCAGCTGTGTTTGTTGCTTCAACACTAATGGAAAATGGAGGTGTTCCTGAATCTGCTGCCCCTGAGGCACTCCTGAAAGAAGCTAT TCATGTCATCAGCTGCGGGTACGAAGACAAGACCGATTGGGGACAAGAGATTGGATGGATTTATGGTTCCGTAACAGAGGATATTCTGACAGGATTCAAG ATGCATGCTCGCGGTTGGAAATCGATCTATTGCATGCCGGAACGCGCTGCATTCAAAGGTTCTGCACCCATCAATCTTTCGGATCGTCTGAATCAAGTGC TCCGTTGGGCTCTAGGTTCAGTCGAGATTCTGTTCAGTCGGCATTGCCCCATGTGGTACGGCTATGGTGGAAGGCTGAAGTTCCTTGAGAGATTCGCTTA CATCAATACCACCATTTACCCCATCACCTCCATCCCTCTGCTTGCGTACTGTACATTGCCAGCTGTCTGTCTCCTCACCGGGAAGTTCATTATTCCTCAG ATCAGTAACCTTGCTAGTATATGGTTTATTTCCCTCTTTCTCTCCATCTTCGCAACCGGTATCCTCGAAATGAGATGGAGTGGGGTCGGCATCGACGAGT GGTGGAGAAACGAGCAGTTCTGGGTCATTGGAGGAGTGTCAGCACATCTCTTCGCCGTCTTCCAAGGTCTCCTCAAGGTCCTAGCAGGTATCGACACCAA CTTCACAGTCACGTCCAAGGCCAACGACGAGGACGGAGACTTCGCCGAACTCTACCTCTTCAAATGGACGACTCTCCTTATCCCTCCCACCACATTGCTC GTGATCAACCTCGTCGGAGTCGTTGCAGGAGTCTCGTACGCCATCAACAGCGGGTACCAGTCGTGGGGTCCCCTCTTCGGTAAACTCTTCTTTGCCTTCT GGGTGATTGTCCATCTCTACCCTTTCCTTAAAGGTCTCATGGGTCGCCAGAATCGAACCCCCACGATCGTCGTGGTGTGGTCGATCCTTCTCGCGTCCAT CTTCTCACTGCTGTGGGTTCGCATCGACCCCTTCACGACCCGGGTCACTGGCCCTGATGTCGACCAGTGTGGGATCAACTGCTAG
AA sequence Show only first row Show all	>Lus10012198 pacid=23154932 polypeptide=Lus10012198 locus=Lus10012198.g ID=Lus10012198.BGIv1.0 annot-version=v1.0 MELEADHGGVSSPSPFTFTTFQLFLAHFILTAIRDIADPVLVYSTKNVKQQVCQICSDDIGKTSDGEPFLACHVCAFPVCRPCYEYERKDGTQSCPQCKT KYTRHKGSPAIHGEQVDDGEFKDATKSTAQPGGIQDEKHKIDRMLGWESGSGRKDYVAPSYENLTHIPYAASRPSMSGELSAASPGRYSMASPESGSRAT IRLGDQQREYGSGGFGNVAWKERIDGWKMKPEKNTAPPSVSNAPSEGRGGVDFDASTDILMDDLLNDETRQPLSRKVPISSSKINPYRMVIVLRLIILCI FFHYRLTNPVRDAIPLWLISVICEIWFAVSWILDQFPKWFPVNRETYLDRLSLRYEKEGEPSQLASVDIFVSTVDPLKEPPIVTANTVLSILAVDYPVDK VSCYVSDDGAAMLSFESLAETAEFARKWVPFCKKYNIEPRAPEFYFSQKIDYLKDKVQPSFVKDRRSMKREYEEFKIRVNGLVAKAQKVPEEGWFMQDGT PWPGNNTRDHPGMIQVFLGHSGGLDSDGNELPRLVYVSREKRPGFQHHKKAGAMNSLVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGRQ VCYVQFPQRFDGIDKNDRYANRNTVFFDMNLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKAKHTKPGFLSSCFGGSRKKSSKSSKKDSKKKSSRHVDP TVPVFNLEDIEEGVEGAGFDDEKSLLMSQMTLEKRFGQSAVFVASTLMENGGVPESAAPEALLKEAIHVISCGYEDKTDWGQEIGWIYGSVTEDILTGFK MHARGWKSIYCMPERAAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKFLERFAYINTTIYPITSIPLLAYCTLPAVCLLTGKFIIPQ ISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDGDFAELYLFKWTTLLIPPTTLL VINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVDQCGINC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10012198 [exp]	0	1
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10041798 [exp]	4.0	0.8814
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Lus10013189 [exp]	4.9	0.8619
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10021177 [exp]	5.1	0.8831
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10005982 [exp]	5.5	0.8840
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10038017 [exp]	6.2	0.8612
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008945 [exp]	6.9	0.8713
AT4G36660			Protein of unknown function (D...		Lus10026030 [exp]	7.1	0.8713
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Lus10037521 [exp]	7.1	0.8662
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	7.3	0.8817
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10028348 [exp]	7.5	0.8700

Compare expression of checked genes

Lus10012198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.