Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39670 131 / 3e-38 Calcium-binding EF-hand family protein (.1) AT3G29000 113 / 1e-31 Calcium-binding EF-hand family protein (.1) AT3G47480 74 / 2e-16 Calcium-binding EF-hand family protein (.1) AT2G43290 71 / 3e-15 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT4G12860 67 / 2e-14 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1) AT3G59440 68 / 4e-14 Calcium-binding EF-hand family protein (.1) AT4G03290 67 / 5e-14 EF hand calcium-binding protein family (.1) AT1G05990 67 / 6e-14 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT3G07490 64 / 9e-13 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT4G20780 62 / 5e-12 CML42 calmodulin like 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007536 [exp] 331 / 3e-117 AT5G39670 131 / 2e-38 Calcium-binding EF-hand family protein (.1) Lus10026301 [exp] 208 / 1e-68 AT5G39670 135 / 5e-40 Calcium-binding EF-hand family protein (.1) Lus10042369 [exp] 204 / 3e-67 AT5G39670 133 / 2e-39 Calcium-binding EF-hand family protein (.1) Lus10034463 [exp] 100 / 6e-26 AT3G29000 103 / 2e-27 Calcium-binding EF-hand family protein (.1) Lus10019090 [exp] 100 / 6e-26 AT3G29000 103 / 1e-27 Calcium-binding EF-hand family protein (.1) Lus10020389 [exp] 72 / 1e-16 AT3G07490 130 / 1e-40 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10027701 [exp] 74 / 8e-16 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10009564 [exp] 69 / 9e-15 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10006644 [exp] 70 / 1e-14 AT3G07490 148 / 3e-45 calmodulin-like 3, ARF-GAP domain 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084800 [exp] 166 / 9e-52 AT5G39670 142 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.004G122900 [exp] 143 / 5e-43 AT5G39670 141 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.017G029700 [exp] 77 / 3e-17 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 75 / 1e-16 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.008G087900 [exp] 70 / 6e-15 AT3G29000 62 / 2e-12 Calcium-binding EF-hand family protein (.1) Potri.018G127100 [exp] 69 / 4e-14 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G239100 [exp] 67 / 4e-14 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.006G065900 [exp] 68 / 6e-14 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G047300 [exp] 63 / 4e-12 AT3G22930 171 / 3e-54 calmodulin-like 11 (.1) Potri.006G276500 [exp] 62 / 8e-12 AT4G20780 74 / 8e-17 calmodulin like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10012199 pacid=23154941 polypeptide=Lus10012199 locus=Lus10012199.g ID=Lus10012199.BGIv1.0 annot-version=v1.0 ATGGCTTTCTTCCAAGTCTACTACTTGATCACACCCCAAGAACCAATCTTCACCGCCAAGCAATCTTCCTCTTTTCCTTCCTCATTCATAGCTCTATTCC TTGACATCGTCTTGTGCAAACTAATCCTGGAACGGATCGGAAACCCTCACAATAAACTCTTCTCCAGATTCTGGTTCTTTTTCAAGCAACAGCTGAGACT TGCTGTACAAGTAACAGAAGAAGTAGTACCAGTAAAGGCAGAGTTGGTCAACGAAGAGATATTAAGCAGAGAAGAGGTGGAGACTGCGATGGCAAAGCTT GGATTCGTAAGCAACCCGGAAGGGGAACATCTTAGGGAGAAAATGGGTAGCGATCAGATACTGGAGCTTTTCGACGAGAAGGAGCCTAGCTTGGAGGAAG TGAAAGAGGCATTCGAGGTGTTCGACTTGAACGGAGATGGGTTTGTGGACGAGTTGGAGCTGCAGAGGGTTATGGCTGCCTTGGGGTTCAAGGAAGGGTT TGGAGTTGAGAGGTGTAGGGAGATGATCAGAGTGGTTGATGACAATGGTGATGGGATGGTTGAGTTTGGGGAGTTTGTTAAGCTTATGGACAATAGTTTT TGTTAA
AA sequence Show only first row Show all	>Lus10012199 pacid=23154941 polypeptide=Lus10012199 locus=Lus10012199.g ID=Lus10012199.BGIv1.0 annot-version=v1.0 MAFFQVYYLITPQEPIFTAKQSSSFPSSFIALFLDIVLCKLILERIGNPHNKLFSRFWFFFKQQLRLAVQVTEEVVPVKAELVNEEILSREEVETAMAKL GFVSNPEGEHLREKMGSDQILELFDEKEPSLEEVKEAFEVFDLNGDGFVDELELQRVMAALGFKEGFGVERCREMIRVVDDNGDGMVEFGEFVKLMDNSF C

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39670			Calcium-binding EF-hand family...		Lus10012199 [exp]	0	1
AT1G70140		ATFH8	formin 8 (.1)		Lus10010724 [exp]	3.7	0.8185
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041225 [exp]	4.5	0.8266
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Lus10041534 [exp]	6.8	0.8503
AT1G03230			Eukaryotic aspartyl protease f...		Lus10000080 [exp]	8.0	0.8337
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10042798 [exp]	8.8	0.8532
AT5G01380	Trihelix		Homeodomain-like superfamily p...		Lus10004806 [exp]	10.1	0.8139
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10026625 [exp]	12.5	0.8387
AT4G34210		ASK11	SKP1-like 11 (.1)		Lus10041874 [exp]	17.9	0.8458
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10013039 [exp]	19.6	0.8481
					Lus10016654 [exp]	22.8	0.7870

Compare expression of checked genes

Lus10012199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.