Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13650 1024 / 0 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT2G33040 506 / 7e-174 ATP3 gamma subunit of Mt ATP synthase (.1) AT2G31060 414 / 2e-133 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G08650 126 / 8e-30 Small GTP-binding protein (.1) AT4G04640 113 / 1e-26 ATPC1 ATPase, F1 complex, gamma subunit protein (.1) AT1G15700 109 / 2e-25 ATPC2 ATPase, F1 complex, gamma subunit protein (.1) AT5G39900 107 / 6e-24 Small GTP-binding protein (.1) AT3G22980 76 / 1e-13 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT2G45030 73 / 5e-13 Translation elongation factor EFG/EF2 protein (.1) AT1G62750 73 / 6e-13 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007535 [exp] 1170 / 0 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10042366 [exp] 578 / 0 AT2G33040 508 / 0.0 gamma subunit of Mt ATP synthase (.1) Lus10007534 [exp] 504 / 4e-174 AT2G33040 445 / 3e-159 gamma subunit of Mt ATP synthase (.1) Lus10002179 [exp] 378 / 3e-119 AT2G31060 1036 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10039896 [exp] 356 / 2e-111 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10035968 [exp] 129 / 2e-30 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10007250 [exp] 117 / 7e-27 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1) Lus10015364 [exp] 117 / 7e-27 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1) Lus10025694 [exp] 112 / 1e-25 AT5G08650 1009 / 0.0 Small GTP-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G053000 [exp] 1046 / 0 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.015G057700 [exp] 541 / 0 AT2G33040 513 / 0.0 gamma subunit of Mt ATP synthase (.1) Potri.012G066100 [exp] 540 / 0 AT2G33040 515 / 0.0 gamma subunit of Mt ATP synthase (.1) Potri.013G123700 [exp] 410 / 6e-132 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.011G024700 [exp] 121 / 1e-29 AT4G04640 518 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Potri.001G305300 [exp] 119 / 2e-27 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.004G014850 [exp] 112 / 3e-26 AT4G04640 557 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Potri.017G079800 [exp] 92 / 5e-19 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.005G098100 [exp] 74 / 2e-13 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 74 / 5e-13 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus CL0437 [flax] [poplar] PF00231 [flax] [poplar] ATP-synt ATP synthase CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10012200 pacid=23154940 polypeptide=Lus10012200 locus=Lus10012200.g ID=Lus10012200.BGIv1.0 annot-version=v1.0 ATGGCGATGGCTGCTTTCAGACGCGAAGGGAGGCGATTCGCCGGCTCTCTCACCGCTCCCCAGCCAATGTCGGCTATCCGATCCGCGCTCATCTCTGAGG AGCAAGTGCCTCTTGGAGTGCGGTCAATCTCAACTCAAATTGTTAGAAACCGTATGAAGAGTGTCAAGAATATTCAAAAAATTACCAAGGCTATGAAGAT GGTTGCTGCATCAAAGTTGCGTGCAATTCAGACCAAAACTGAAAATTCTCGTGGCCTCTGGCAACCTTTTACTGCTCTTCTTGGTGACACTCCTGCTGTC GATGTGAAGAAGAACATCATTGTCACTATTTCTTCTGACAAAGGTCTTTGTGGAGGAATTAACTCCACTTCAGTCAAGATAAGCAGAGCTATTCACAAGT TGACTTCTGGTCCTGAAAAGGAAGTCAAATATGCCATCTTGGGAGAAAAGGCAAAAGCTCAGCTAGTGCGTGATTCAAAGAAGGATATTGAACTATCCAT CAGTGAGCTCCAAAAGAATCCATTGAATTTCACCCAGGTTGCTGTGATAGCAGATGACATCTTGAAGAATGTAGAATTTGACGCCCTGAGGATTGTGTTC AACAAATTTCAGTCGGTTGTCTCATTTTTGCCAACTATGTCAACTGTCTTATCCCCAGAGGTTGTTGAGAGAGAGGTAGAGGCTGGTGGAAGTCTTGGCG TGCTGGATTCCTATGAAATTGAAGGTGGTGAAACGAAAGGAGAAATTCTTCAGAATCTTGTTGAATTCCAGTTTTCTTGCGTAATGTTTAATGCTGTTCT AGAGAACGCTTGCAGTGAGCAAGGCGCAAGGATGTCTGCCATGGATAGTTCCAGCAGGAATGCTGGAGATATGCTTGACCGTCTGACCCTGACTTATAAC AGGACTCGTCAAGCTTCAATCACCACTGAGTTGACCGAGATTATCTCCGGAGCATCAGCACTTGAAGAAGAAAAGAAGAGTCAGCTGATGAGAAGAGGTG ACATAAGGAACATCGCAATCGTGGCTCATGTTGACCACGGAAAGACGACTTTGGTCGACTCCATGTTGAAGCAAGCTAAGGATACCAAGATTAATATCAT TGACACTCCGGGACATTCTGATTTTGGCGGTGAAGTTGAGCGTATATTGAATATGGTGGAAGGGGTTCTTTTGGTGGTAGATTCTGTTGAGGGGCCAATG CCGCAGACACGATTTGTTCTGAAGAAGGCTCTTGAGTTTGGCCATGCTGTCGTTGTCGTTGTCAATAAAATTGACAGGCCTTCAGCTCGTCCAGATCATG TCATCAATTCCACCTTTGAGCTATTCATTGAGCTGAATGCATCAGATGAGCAGTGTGATTTCCAAGCCATTTATGCCAGTGGCATTCAAGGAAAGGCAGG ATTGTCTCCTGATGATTTGGCTGACGATCTTGGGCCATTGTTTGAGACTGTGATCAGATGCATACCTGGACCTCTTATCAATAAAGATGGTGCTCTGCAA ATGCTTGCCACAAATCTTGAATATGACGAACATAAGGGGCGCATAGCTATTGGACGTGTTCATTCAGGGGTCATGCGGAGAGGGATGGAAGTCAGGGTAT GCACATCGGAGGATTCATGTAGATTTGCAAGGCTTAGTGAGCTTTTTGTGTATGAGAAATTCTATAGGGTTCCAGTAGACAGTGTTGAAGCCGGTGACAT TTGTGCTGCTTGTGGAATCGAGGACATTCAGATTGGGGAGACCATTGCGGATAAAGCGTTAGGCAAGCCATTACCTTCTATCAAAGTGGAAGAGCCGACT GTGAAAATGGCTTTCTCCATAAATACTTCACCTTTTGTCGGACGAGAGGGGAAATATGTTACCAGCCGAAACTTAAGAGATCGACTATACCGCGAACTTG AACGGAATTTGGCTATGAAAGTTGAAGATGGTGAAACCTCGGACACTTTTGTTGTTAGTGGTCGTGGTACTCTACACATAACCATATTGATAGAGAACAT GCGAAGGGAAGGATATGAATTCATGGTAGGGCCTCCGAAGGGGGTTAACAAAAGGGGACCGGATGACAAATTGTTGGAACCGTTTGAGATTGCTACTGTT GAGGTTCCTGAAGTGCACCAAGGTGCTGTTATGGAACTTTTGGGCAAACGGCGAGGACAAATAACTGACATGCAAGGAGTCGGGTCGGAGGGTACTACAC TACTCAAATACCGAATCCCGACCCGTGGCCTTCTCGGGTTGAGAAATGCAATCCTGACTGCTTCCCGTGGGACAGCAATTCTCAACACCATTTTCGATGG CTATGGCCCTTGGGCCGGTGATATCAGCACCAGGGATCAGGGTTCATTAGTAGCATTTGAGGAGGGAACATCGACCTCATACGCGATGGCTAGCTCGCAG GAAAGAGGCCTGCTGTTCATTGCTCCCGGTGCAGACGTCTACAAAGGTCAGATAGTCGGGATCCATCAGCGGTCTGGCGACCTGGGTCTCAACGTCTGCA AGAAAAAGGCTGCGACCAATGTTCGTTCGAACAAGGAGGTGTCAGTCGTGCTCGACACACCCTTGGATTACAGTCTGGATGACTGCATCGAGTACATCCA GGAAGACGAGCTGGTGGAGGTGACGCCAGCAAGCATTCGGATGTGCAAGAATCCCAAGTACTCCAAGAAGGGCAGCAGATCATCGTAG
AA sequence Show only first row Show all	>Lus10012200 pacid=23154940 polypeptide=Lus10012200 locus=Lus10012200.g ID=Lus10012200.BGIv1.0 annot-version=v1.0 MAMAAFRREGRRFAGSLTAPQPMSAIRSALISEEQVPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQTKTENSRGLWQPFTALLGDTPAV DVKKNIIVTISSDKGLCGGINSTSVKISRAIHKLTSGPEKEVKYAILGEKAKAQLVRDSKKDIELSISELQKNPLNFTQVAVIADDILKNVEFDALRIVF NKFQSVVSFLPTMSTVLSPEVVEREVEAGGSLGVLDSYEIEGGETKGEILQNLVEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYN RTRQASITTELTEIISGASALEEEKKSQLMRRGDIRNIAIVAHVDHGKTTLVDSMLKQAKDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM PQTRFVLKKALEFGHAVVVVVNKIDRPSARPDHVINSTFELFIELNASDEQCDFQAIYASGIQGKAGLSPDDLADDLGPLFETVIRCIPGPLINKDGALQ MLATNLEYDEHKGRIAIGRVHSGVMRRGMEVRVCTSEDSCRFARLSELFVYEKFYRVPVDSVEAGDICAACGIEDIQIGETIADKALGKPLPSIKVEEPT VKMAFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETSDTFVVSGRGTLHITILIENMRREGYEFMVGPPKGVNKRGPDDKLLEPFEIATV EVPEVHQGAVMELLGKRRGQITDMQGVGSEGTTLLKYRIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDISTRDQGSLVAFEEGTSTSYAMASSQ ERGLLFIAPGADVYKGQIVGIHQRSGDLGLNVCKKKAATNVRSNKEVSVVLDTPLDYSLDDCIEYIQEDELVEVTPASIRMCKNPKYSKKGSRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Lus10012200 [exp]	0	1
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10009172 [exp]	4.8	0.9248
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Lus10007535 [exp]	8.0	0.9017
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10035473 [exp]	9.2	0.9101
AT5G42760			Leucine carboxyl methyltransfe...		Lus10000713 [exp]	10.0	0.9006
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10016033 [exp]	10.1	0.9116
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10012591 [exp]	15.7	0.8992
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10018162 [exp]	16.9	0.8844
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10031088 [exp]	17.0	0.8899
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	17.2	0.8896
AT5G47610			RING/U-box superfamily protein...		Lus10027023 [exp]	18.2	0.8289

Compare expression of checked genes

Lus10012200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.