Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48040 413 / 4e-143 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 275 / 3e-89 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT2G39120 203 / 1e-61 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 197 / 2e-58 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G24320 194 / 3e-58 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 148 / 1e-40 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 129 / 6e-34 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G21970 130 / 8e-34 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 130 / 4e-33 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G79120 127 / 8e-33 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011327 [exp] 712 / 0 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 244 / 9e-77 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000847 [exp] 225 / 2e-70 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10038710 [exp] 209 / 2e-63 AT2G39120 467 / 4e-164 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10035074 [exp] 199 / 2e-57 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10017896 [exp] 198 / 3e-57 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10037979 [exp] 145 / 5e-41 AT2G39120 308 / 1e-104 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 144 / 5e-39 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000096 [exp] 138 / 1e-36 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230900 [exp] 518 / 0 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 273 / 3e-88 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.004G223200 [exp] 223 / 7e-69 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.008G036600 [exp] 218 / 7e-67 AT2G39120 509 / 0.0 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 199 / 2e-57 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 150 / 3e-41 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 129 / 2e-33 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 129 / 2e-33 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 129 / 7e-33 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.001G439100 [exp] 124 / 2e-31 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10012201 pacid=23155009 polypeptide=Lus10012201 locus=Lus10012201.g ID=Lus10012201.BGIv1.0 annot-version=v1.0 ATGTTTACATTGGGGAAGGCTGAAATCTCCGGATTCCTCCATGGATGCCGTAAACCCTATAGCTGGCATCAAACTCTCAACTTAGTGAACGTGAAATTGA AATGGGTTAAAGATAGCGTAATCGACACTGTTATCTCCGGTCAGAACGATCTCAAAGCCGTCTGTTATTTAGTTTCCATAATCTCATCATCATCATCACT GCCTGTACACTCACTCACTAAGCACCGTGGCCAGCTAGGGTTCCCTCACGATCTCAAGCTATCGACATTCCTCAGGCGATACCCTACGATCTTCGCCGAG TCCCGCACCTTCTTCGACAGCGGCGGCACTCGCGTTCCTTGCTTCGGGTTAACACCGGAGGCAATCGAGCTTCACAAAGAGGAAATAAATATCGCAGCTA GAATACGAAACGATCTCTTTGACAGGCTTACCAAGCTGCTGATGCTCACAAAGGAAAAATGTCTTCCTTTACAGACTATTGACCAGCTGAGATGGGACTT GGGATTACCGTACAATTACTATGAATCTTTGATAATGCAGCATTGCAGCCATAGGTTTTGCTCCGTTCGTCTCCCTGACGATCGCCTCGGGCTGAAGCTG CTCGAATGGGATGATCGGCTCGCTGTTTCCGAATTACAGAAGAATGCACCTTTACAGCAGAATGAAGAAGACGTTAAAAGTGGTTGCTTGGCTTTTCCAG TTAGCTTCACTAGAGGGTTTGGTTTGAAGAGGAAGTGCAGTGAATGGTTAGAAGAGTGGCAGAAGCTGCCTTACACTTTGCCTTACGATGATCCCTCGCA TTTGGACGTAAGAACAGATGTATCTGAAAAAAGGATCGTTGGAGTTTTCCATGAGCTTCTTCATCTGAGCTTAGAGAAGAAAACCGAGAGGAAGAACGTG AGCAATATGCGGAAGGCTTTACGTCTGCCTCAGAAGTTTACGAGGGTGTTTGAGAGGCATCCTGGAATTTTTTACATCTCTAAGAAGTGTGACACTCAGA CTGTTGTGCTTCGAGAAGCATATGAGCGTGGCCGATTGGTTTATGAGCATCCTCTCCTCGAGATTAGGGGTAAGTATGCAAGGTTGATGAGGAGAGGGTT TCTGGAGAGGAGCATGGGGTTACACAAGGGAAGTGAAGAGTCTGTGGAGGAAGAACACATACAGTAA
AA sequence Show only first row Show all	>Lus10012201 pacid=23155009 polypeptide=Lus10012201 locus=Lus10012201.g ID=Lus10012201.BGIv1.0 annot-version=v1.0 MFTLGKAEISGFLHGCRKPYSWHQTLNLVNVKLKWVKDSVIDTVISGQNDLKAVCYLVSIISSSSSLPVHSLTKHRGQLGFPHDLKLSTFLRRYPTIFAE SRTFFDSGGTRVPCFGLTPEAIELHKEEINIAARIRNDLFDRLTKLLMLTKEKCLPLQTIDQLRWDLGLPYNYYESLIMQHCSHRFCSVRLPDDRLGLKL LEWDDRLAVSELQKNAPLQQNEEDVKSGCLAFPVSFTRGFGLKRKCSEWLEEWQKLPYTLPYDDPSHLDVRTDVSEKRIVGVFHELLHLSLEKKTERKNV SNMRKALRLPQKFTRVFERHPGIFYISKKCDTQTVVLREAYERGRLVYEHPLLEIRGKYARLMRRGFLERSMGLHKGSEESVEEEHIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48040			Ubiquitin carboxyl-terminal hy...		Lus10012201 [exp]	0	1
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10028851 [exp]	3.6	0.8709
AT1G80550			Pentatricopeptide repeat (PPR)...		Lus10011439 [exp]	5.0	0.8536
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	5.8	0.9062
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10002107 [exp]	9.8	0.8808
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	11.0	0.9019
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10023319 [exp]	11.0	0.8685
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	13.7	0.8873
AT5G04710			Zn-dependent exopeptidases sup...		Lus10034142 [exp]	14.7	0.8753
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	15.7	0.8884
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10011485 [exp]	15.7	0.8348

Compare expression of checked genes

Lus10012201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.