Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34720 84 / 1e-19 CCAAT NF-YA4 "nuclear factor Y, subunit A4", nuclear factor Y, subunit A4 (.1) AT1G30500 81 / 1e-18 CCAAT NF-YA7 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) AT1G54160 71 / 4e-14 CCAAT NFYA5, NF-YA5 NUCLEAR FACTOR Y A5, "nuclear factor Y, subunit A5", nuclear factor Y, subunit A5 (.1) AT1G72830 71 / 4e-14 CCAAT NF-YA3, ATHAP2C, HAP2C "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) AT1G17590 71 / 9e-14 CCAAT NF-YA8 "nuclear factor Y, subunit A8", nuclear factor Y, subunit A8 (.1.2.3.4) AT3G14020 69 / 3e-13 CCAAT NF-YA6 "nuclear factor Y, subunit A6", nuclear factor Y, subunit A6 (.1) AT5G06510 67 / 4e-13 CCAAT NF-YA10 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) AT3G20910 67 / 1e-12 CCAAT NF-YA9 "nuclear factor Y, subunit A9", nuclear factor Y, subunit A9 (.1) AT3G05690 66 / 4e-12 CCAAT NF-YA2, ATHAP2B, HAP2B, UNE8 UNFERTILIZED EMBRYO SAC 8, "nuclear factor Y, subunit A2", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, nuclear factor Y, subunit A2 (.1) AT5G12840 61 / 1e-10 CCAAT NF-YA1, ATHAP2A, HAP2A, EMB2220 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011326 [exp] 311 / 4e-107 AT1G30500 118 / 2e-32 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10023358 [exp] 84 / 2e-19 AT1G30500 192 / 5e-63 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10038448 [exp] 81 / 7e-18 AT1G30500 205 / 1e-66 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10016411 [exp] 72 / 2e-14 AT5G12840 140 / 1e-39 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10019708 [exp] 72 / 5e-14 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10013592 [exp] 69 / 3e-13 AT5G06510 175 / 1e-52 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Lus10021259 [exp] 69 / 3e-13 AT5G06510 178 / 5e-54 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Lus10030137 [exp] 47 / 9e-06 AT5G12840 170 / 5e-51 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10009944 [exp] 47 / 1e-05 AT5G12840 229 / 1e-73 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G053500 [exp] 93 / 6e-22 AT1G30500 123 / 3e-34 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.011G098400 [exp] 79 / 2e-17 AT1G30500 171 / 4e-54 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.001G372100 [exp] 79 / 3e-17 AT1G30500 170 / 1e-53 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.009G060600 [exp] 77 / 3e-16 AT5G12840 114 / 9e-30 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.001G266000 [exp] 76 / 7e-16 AT5G12840 103 / 1e-25 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.006G201900 [exp] 76 / 1e-15 AT5G06510 166 / 3e-49 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Potri.016G068200 [exp] 76 / 1e-15 AT5G06510 194 / 2e-60 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Potri.006G145100 [exp] 75 / 2e-15 AT1G72830 168 / 3e-49 "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) Potri.018G064700 [exp] 69 / 2e-13 AT1G72830 172 / 5e-51 "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) Potri.009G052900 [exp] 62 / 8e-11 AT5G12840 203 / 1e-63 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02045 [flax] [poplar] CBFB_NFYA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Representative CDS sequence Show only first row Show all	>Lus10012202 pacid=23154911 polypeptide=Lus10012202 locus=Lus10012202.g ID=Lus10012202.BGIv1.0 annot-version=v1.0 ATGATGTACAGAAAATTGGATCATGAAGCTGCAAACCAGAAGCAGCAGCATCAGTATAACCAACACTATGAATCATCTAATCCCCAGCCTATCTGGTACA GTAACACGAACGGAGATAATGGCGGAAGTGGCACCATAGATTTCTCCCAACTGGGTTGCAGCAGTAGCAGCAGTAGATATGATGTTGGTTCAGACTCCAA ATTCACAGACTCAAAGCCTCAGTTTTGGCTCTCTGATGGAATTGACAACACAGCAAGAATAATGCAGCAAACCTTGGATCCAGCGTCAGATTTGTCCAAT TCTCGACAAGGCTGTCAAGAGCAGCATCATCATCATTCACAGGCTGTTATCCCTGCAGCTATTAACGAGTTCATTGGATTACAACCCCAACTAGACTCCT CTGTTGGCCCCTCCTTTGCTGAACCTCAGTATCTTGGAGTTGATGTTCATCCCAACGAAATGGCGGTACCTGTACCACTTGAATTGCCAGAAGAAGAACC TGTGTATGTGAATGCAAAGCAGTACCATGGCATTCTGAGGAGAAGACAGTCTCGAGCCAAGGCAGAGCTGGAGAAGAAAGTGGTCAAAGTTAGAAAGCCA TACCTGCACGAATCAAGACATTTACACGCTATGAGAAGGGAACGAGGGTGTGGTGGCCGTTTCCTCAGCACGAAGAAGAACCATCACTACCACCAACAGC AGCAGATTGGAGAAGGAAGCAGCGCTGATAACAAGAACAGCAAAAGCTCGCACGTTAATCCTACAGGGAACGTTTGGATGGATGGGAAAAGAAGAACGAG AAACTGA
AA sequence Show only first row Show all	>Lus10012202 pacid=23154911 polypeptide=Lus10012202 locus=Lus10012202.g ID=Lus10012202.BGIv1.0 annot-version=v1.0 MMYRKLDHEAANQKQQHQYNQHYESSNPQPIWYSNTNGDNGGSGTIDFSQLGCSSSSSRYDVGSDSKFTDSKPQFWLSDGIDNTARIMQQTLDPASDLSN SRQGCQEQHHHHSQAVIPAAINEFIGLQPQLDSSVGPSFAEPQYLGVDVHPNEMAVPVPLELPEEEPVYVNAKQYHGILRRRQSRAKAELEKKVVKVRKP YLHESRHLHAMRRERGCGGRFLSTKKNHHYHQQQQIGEGSSADNKNSKSSHVNPTGNVWMDGKRRTRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10012202 [exp]	0	1
AT1G10800			unknown protein		Lus10037441 [exp]	2.0	0.9429
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	2.4	0.9433
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	2.4	0.9418
AT2G14255			Ankyrin repeat family protein ...		Lus10040833 [exp]	3.7	0.9265
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	4.9	0.9325
AT3G60510			ATP-dependent caseinolytic (Cl...		Lus10028182 [exp]	5.5	0.9273
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	7.4	0.9280
AT2G39530			Uncharacterised protein family...		Lus10031303 [exp]	9.0	0.9186
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	13.4	0.9159
					Lus10039025 [exp]	15.3	0.9079

Compare expression of checked genes

Lus10012202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.