Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38020 1006 / 0 EMB258, MAN, VCL1 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011325 [exp] 1332 / 0 AT2G38020 1313 / 0.0 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204400 [exp] 1179 / 0 AT2G38020 1285 / 0.0 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2) Potri.002G057800 [exp] 1140 / 0 AT2G38020 1275 / 0.0 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04840 [flax] [poplar] Vps16_C Vps16, C-terminal region PF04841 [flax] [poplar] Vps16_N Vps16, N-terminal region
Representative CDS sequence Show only first row Show all	>Lus10012203 pacid=23154964 polypeptide=Lus10012203 locus=Lus10012203.g ID=Lus10012203.BGIv1.0 annot-version=v1.0 ATGCGGTGGAGGCAAATAGACCTGACGCGGAACAAGGTCGCCTGCGCGCCATTCGGTGGCCCGATCGCCGTCATCCGCGACGATTCGAAGATCGTGCAGC TCTACTCAGAGTCCGCGCTCAGGAAGCTCCGCATATTCAACTCCGCCGGCGTCCTCTTGTCGGAAACGCTGGCGGATCCTGGTGTTGAAGGGGAGGATGA GTTGCCGCATTGTATAGCTGTGATAGAGCCGCAGTTCACGGTGTCTGGTAACGTGGAGGTGCTTTTGGGGATTGGGGATGGGATTGTGATCGTGGATGAG GATGAGGTTAGGCACATTGACGGCGAGACAGTGGAAGGACCTGTGCAGAAGATTGCAGTTACACGGGATGGTAGATTTTTGGCATGTTTTATGCATGATG GAAGGATGGTCGTGATGAATATGTCATTCGAGCCTCTATTTCAGTATCAATGCGAGTCAGCACTTCCTCCAGAGCAGATGGCTTGGTGTGCATTGGACAG TGTGCTTCTTTATTGGGACGATATGCTTTTGATGGTGGGTCCATCATCTGAAGATTCTGTGCGATACATCTATGATGAACCTGTGATTCTTATCCCCGAA TGTGATGGAGTTAGGATACTCTCTAACACAAGCATGGAGTTCCTACAACGGGTACCTGATTCCATCGTTTCCATCTTCAAGATAGGAAGTACGTCACCAG CATCCTTGCTTTTCGATGCCTTGGATCATTTTGACAGGCGTAGCGCTAAGGCAGATGAAAACTTGAGGCTGATAAAAGCAGCCTTGCCCGAGGCTGTTGA GGCATGTATTGATGCAGCAGGTCATGAATTCGATACTTTCCGTCAACAGACTCTGCTTAGAGCTGCAAGCTATGGTCAAGCTTTTTCCAGCAATTTCCAA CGGGAACGCATCCAGGAGATGTGTAAAACTTTACGGGTCTTAAACGCTGTTCGAAACCCTGAAATTGGCATTCCTCTAAGCATTCAGCAGTACAAGACAT TAACAGCACCTGTGCTAATTGCCCGTTTGATTAATTCCCACCAGCATCTCCTTGCTCTACGAATTTCTGAGTATATCGGAACAAATCAGGAAGTAGTAAT AATGCATTGGGCATGTTCAAAGATAACAGCTTCTTTAGCAATTCCAGATGCAGCTCTTCTTGAAATTTTGCTTGACAAGCTGAGGTTGTGCAAGGGCATA TCTTATGCAGCTGTTGCTGCTCATGCAGATAAAAGCGGCCGTCGGAAATTGGCAGCTATGCTTGTTGAACATGAGCCACGCTCCTCGAAACAGGTTCCAC TCCTGTTAAGCATCGGAGAAGAAGATACGGCTCTTATAAAGTCGATGGAAAGTGGTGATACTGACCTGGTTTATCTTGTGCTGTTTCATATCTGGCAGAA GAGGCCAGCCTTGGAGTTTTTTGGGACAATACAAGCCAGGCCGCTGGCACGGGATATGTTTATAACTTATGCACGGTGTTATAAACATGAATTCTTGAAG GACTTTTTCCTATCAACTGGGCAACTTCAAGAGGTAGCATATCTTCTATGGAAGGAATCGTGGGAAATAGTAAAAAACCCGATGGCAAGTAGAGGCTCAG CACTTCATGGCCCACGCATAAAGATGATTGAAAAGGCTCAGAATCTTTTTGCTGAAACAAAAGAACACACCTTCGAATCAAAAGCTGCCGAAGAACATGC AAAACTAATAAGAATTCAACATGAACTAGAAGTGGCCACGAAACAAGCCATTTTCGTAGATTCGAGCATCAGTGATACAATCCGGACGTGTATTGTGCTG GGGAACGATAAATTCGCAACTAAAGTGAAGACGGAGTTCAAGGTCTCTGAAAAGAGATGGTACTGGCTCAAAGTATTCGCTCTAGCAACCGTCGGAAACT GGGAAGCTCTCGAAAAGTTCTCGAGGGAAAAGAGGCCACCAATCGGCTACCGGCCATTCGTGGAGGCATGCATTGATGCCGACGAGAAAGGAGAAGCTCT CAAGTACATACCGAAACTCGCAGATCCCAGAGAAAGAGCTGAGGCATATGCTCGGATAGGAATGGCAAAAGAAGCAGCCGACGCTGCCTCTCTTTTGGCA AAAGACGGCGAACTGCTTGGGCGACTAAGAATGAGCTTCTCGCAGAACACAGCCGCCTCATCCCTCTTCGATACGCTACGAGATCGGTTATCCTTCCAAG GTGTCCCATAA
AA sequence Show only first row Show all	>Lus10012203 pacid=23154964 polypeptide=Lus10012203 locus=Lus10012203.g ID=Lus10012203.BGIv1.0 annot-version=v1.0 MRWRQIDLTRNKVACAPFGGPIAVIRDDSKIVQLYSESALRKLRIFNSAGVLLSETLADPGVEGEDELPHCIAVIEPQFTVSGNVEVLLGIGDGIVIVDE DEVRHIDGETVEGPVQKIAVTRDGRFLACFMHDGRMVVMNMSFEPLFQYQCESALPPEQMAWCALDSVLLYWDDMLLMVGPSSEDSVRYIYDEPVILIPE CDGVRILSNTSMEFLQRVPDSIVSIFKIGSTSPASLLFDALDHFDRRSAKADENLRLIKAALPEAVEACIDAAGHEFDTFRQQTLLRAASYGQAFSSNFQ RERIQEMCKTLRVLNAVRNPEIGIPLSIQQYKTLTAPVLIARLINSHQHLLALRISEYIGTNQEVVIMHWACSKITASLAIPDAALLEILLDKLRLCKGI SYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALIKSMESGDTDLVYLVLFHIWQKRPALEFFGTIQARPLARDMFITYARCYKHEFLK DFFLSTGQLQEVAYLLWKESWEIVKNPMASRGSALHGPRIKMIEKAQNLFAETKEHTFESKAAEEHAKLIRIQHELEVATKQAIFVDSSISDTIRTCIVL GNDKFATKVKTEFKVSEKRWYWLKVFALATVGNWEALEKFSREKRPPIGYRPFVEACIDADEKGEALKYIPKLADPRERAEAYARIGMAKEAADAASLLA KDGELLGRLRMSFSQNTAASSLFDTLRDRLSFQGVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10012203 [exp]	0	1
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	1.4	0.8580
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10023934 [exp]	1.4	0.8260
AT2G15860			unknown protein		Lus10023852 [exp]	3.0	0.8190
AT2G15860			unknown protein		Lus10021000 [exp]	4.0	0.8177
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10010349 [exp]	4.2	0.8040
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	5.9	0.8166
AT3G51050			FG-GAP repeat-containing prote...		Lus10025977 [exp]	6.3	0.7771
AT2G23070			Protein kinase superfamily pro...		Lus10011526 [exp]	6.5	0.7593
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	8.8	0.7902
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017652 [exp]	12.0	0.7696

Compare expression of checked genes

Lus10012203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.