Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22730 113 / 3e-29 MA3 domain-containing protein (.1) AT4G24800 96 / 4e-23 ECIP1 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) AT5G63190 94 / 1e-22 MA3 domain-containing protein (.1.2) AT3G48390 79 / 4e-17 MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011324 [exp] 262 / 4e-84 AT1G22730 816 / 0.0 MA3 domain-containing protein (.1) Lus10018085 [exp] 99 / 4e-24 AT4G24800 995 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10042080 [exp] 97 / 2e-23 AT4G24800 974 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10012205 [exp] 53 / 3e-08 AT1G22730 560 / 0.0 MA3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G199200 [exp] 122 / 1e-32 AT1G22730 828 / 0.0 MA3 domain-containing protein (.1) Potri.012G091900 [exp] 101 / 4e-25 AT5G63190 1022 / 0.0 MA3 domain-containing protein (.1.2) Potri.015G088300 [exp] 100 / 1e-24 AT4G24800 1008 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02847 [flax] [poplar] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Lus10012204 pacid=23155011 polypeptide=Lus10012204 locus=Lus10012204.g ID=Lus10012204.BGIv1.0 annot-version=v1.0 ATGGAGGGTTTTGTATCAAAAGAACACCAGGAGCTTGCGAGATCAGCTGTGGAGAGTGCAGATGCTTCATCTGTTTCTCCATTGCAGATCTCCCCGGGCT CATCCTCCTCTCTCAAGTCTTCTTCATCCAATGGGAATGGGAAGCTCCCTCCCATTGCCACACAACAAAATTCACATGACAAGGAGGCACGTTCTTACAT GGATGGACACCCTAATAAAGGTGGTTCTGATGATGCTTTGTACAATAACGATCCAAAAGATCCAAACTACGATAGCACAGAGGAACAAGAAGTTCAGATA ACACCTTCAAAGTTTGATGACTATAAAAGGAAAGCAACAATAATAGTGGAAGAATACTTCGCAACTAGTGATGTTGTATCAACAGCTAATGAACTGAGGG AACTCAGAATGCCCAGTTTTAGTTATTACTTTGTCAAGAAACTGGTGTCCATGGCAATGGACAGGCATGACAAAGAAAAGGAAATGGCTGCCGGTCTTTT TTCCACTCTCTATGCGTTGATGACATACTTCCACCTGTGTTCTTGA
AA sequence Show only first row Show all	>Lus10012204 pacid=23155011 polypeptide=Lus10012204 locus=Lus10012204.g ID=Lus10012204.BGIv1.0 annot-version=v1.0 MEGFVSKEHQELARSAVESADASSVSPLQISPGSSSSLKSSSSNGNGKLPPIATQQNSHDKEARSYMDGHPNKGGSDDALYNNDPKDPNYDSTEEQEVQI TPSKFDDYKRKATIIVEEYFATSDVVSTANELRELRMPSFSYYFVKKLVSMAMDRHDKEKEMAAGLFSTLYALMTYFHLCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22730			MA3 domain-containing protein ...		Lus10012204 [exp]	0	1
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Lus10032842 [exp]	4.2	0.8518
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	4.5	0.8296
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Lus10038129 [exp]	4.8	0.8533
					Lus10001135 [exp]	6.9	0.8247
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10037528 [exp]	7.9	0.7949
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019021 [exp]	9.2	0.8146
AT3G49490			unknown protein		Lus10032925 [exp]	9.4	0.7946
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028126 [exp]	9.5	0.8054
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10021570 [exp]	10.0	0.8330
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10017160 [exp]	15.2	0.8140

Compare expression of checked genes

Lus10012204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.