Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22730 504 / 3e-174 MA3 domain-containing protein (.1) AT3G48390 403 / 2e-135 MA3 domain-containing protein (.1) AT5G63190 397 / 2e-132 MA3 domain-containing protein (.1.2) AT4G24800 385 / 9e-128 ECIP1 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) AT5G57870 60 / 2e-09 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) AT4G30680 50 / 1e-06 Initiation factor eIF-4 gamma, MA3 (.1) AT2G24050 50 / 2e-06 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011324 [exp] 809 / 0 AT1G22730 816 / 0.0 MA3 domain-containing protein (.1) Lus10018085 [exp] 406 / 1e-135 AT4G24800 995 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10042080 [exp] 400 / 4e-133 AT4G24800 974 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10028156 [exp] 65 / 7e-11 AT3G60240 1275 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10042856 [exp] 64 / 2e-10 AT3G60240 970 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10010782 [exp] 56 / 5e-08 AT5G57870 952 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10012204 [exp] 52 / 9e-08 AT1G22730 117 / 1e-30 MA3 domain-containing protein (.1) Lus10022168 [exp] 55 / 1e-07 AT5G57870 976 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10036594 [exp] 45 / 0.0001 AT5G57870 625 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G199200 [exp] 627 / 0 AT1G22730 828 / 0.0 MA3 domain-containing protein (.1) Potri.015G088300 [exp] 425 / 4e-143 AT4G24800 1008 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Potri.012G091900 [exp] 420 / 6e-141 AT5G63190 1022 / 0.0 MA3 domain-containing protein (.1.2) Potri.002G061800 [exp] 79 / 4e-18 AT1G22730 74 / 4e-17 MA3 domain-containing protein (.1) Potri.018G104100 [exp] 58 / 8e-09 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G182100 [exp] 56 / 3e-08 AT5G57870 884 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.002G140200 [exp] 53 / 3e-07 AT3G60240 942 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.006G265300 [exp] 52 / 9e-07 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.018G017600 [exp] 49 / 5e-06 AT5G57870 809 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.014G052600 [exp] 47 / 3e-05 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02847 [flax] [poplar] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Lus10012205 pacid=23154948 polypeptide=Lus10012205 locus=Lus10012205.g ID=Lus10012205.BGIv1.0 annot-version=v1.0 ATGAATAAGTCGGTGGATGATGTGAAGGTCAAGATAAACAACCTGTTGGTAGAGTACGTAGCCAGTGGTGATAAGAATGAGGCTTGCAGATGCATCAAGG AATTGAAAGTTCCGTTCTTTCACCACGAGATAGTTAAGCGAGCTCTGGTGATGGCCATGGAGAGACAGCCAGTCGAAGGTCATCTGCTGGATCTGCTCAA GAAAGCAACAGAAGTAGGGTTGATAAATTCCAGCCAAGTCACGAAAGGGTTTGGGAGGATTATAGACGTTGTTGATGACTTGTCACTTGACATTCCTAAT GCAAGAGGGATTCTCAAATCTTTGATATCTAAAGCAGCATCAGAAGGATGGCTGTCTGCTTCGTCCCTGAAGTCGCTTTCACTACCTTCCCCGAAAGGAC CTATGGAAGATGGTGCTGCAAAGATCTTCAAGCTGAAGGCACAATCCATCATTCAGGAGTATTTCTTGTCAGGTGATATAGCAGAGGTTAGTGATTGTAT TGAATCAGAGAACAGTTCTTGCTCACCTCAACTAAATGCTATGTTCATCAAAAGACTCGTGACTCTAGCAATGGATAGGAAGAATCGGGAGAAGGAAATG GCTTCCGTGTTACTCTCGTCTCTGTGTTTCCCTACTGATGATGTTGTACATGGATTTGTTATGCTAATCGAATCAGCAGACGACACAGTCTTAGATAACC CAATCGTGGTTGAAGATCTCGGAATGTTCTTAGCTCGAGCTGTCGTGGACGAGGTCATTGCCCCGCAGCAGCTGGAAGAAATCGGAAACCAATTCCTCGG GACAGACTCAACCGGTAACAAGGTCCTGCAAATGGCGAAGTCCCTGCTAAAGGCCAGACTTGCCGGGGAAAGGATCCTAAGGTGCTGGGGTGGTGGAGGA AGTAGTAGCAAGAACGGCTGGGCAGTCGAAGACATCAAAGACAAGATCGGCAAGCTGCTCGAAGAGTTCGAATCTGGAGGCGACGTGAGGGAAGCCTGCC GTTGTATCAAAGAACTCGGGATGCCCTTCTTCCACCATGAAGTCGTGAAGAAAGCACTGGTGAAGATCATGGAGAGCAAGATTGAGAAGCTCTGGGGCCT TCTCAACGAGTGCTTCCGCTCGGGGCTCATCACAACCTACCAGATGACCAAGGGCTTTGGCAGGGTCGCAGAGTGCCTCGAGGACCTGCGCCTCGACGTC CCCGATGCTGAGAAGCAGTTCGGGTTCTACATTGAAAAAGCCAAACTCGCTGGGTGGTTAGATTCCTCGTCCGGCCCGGCCAAATCAAGCTATGGTAAAG AGAATGGCATAAATGTATAA
AA sequence Show only first row Show all	>Lus10012205 pacid=23154948 polypeptide=Lus10012205 locus=Lus10012205.g ID=Lus10012205.BGIv1.0 annot-version=v1.0 MNKSVDDVKVKINNLLVEYVASGDKNEACRCIKELKVPFFHHEIVKRALVMAMERQPVEGHLLDLLKKATEVGLINSSQVTKGFGRIIDVVDDLSLDIPN ARGILKSLISKAASEGWLSASSLKSLSLPSPKGPMEDGAAKIFKLKAQSIIQEYFLSGDIAEVSDCIESENSSCSPQLNAMFIKRLVTLAMDRKNREKEM ASVLLSSLCFPTDDVVHGFVMLIESADDTVLDNPIVVEDLGMFLARAVVDEVIAPQQLEEIGNQFLGTDSTGNKVLQMAKSLLKARLAGERILRCWGGGG SSSKNGWAVEDIKDKIGKLLEEFESGGDVREACRCIKELGMPFFHHEVVKKALVKIMESKIEKLWGLLNECFRSGLITTYQMTKGFGRVAECLEDLRLDV PDAEKQFGFYIEKAKLAGWLDSSSGPAKSSYGKENGINV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22730			MA3 domain-containing protein ...		Lus10012205 [exp]	0	1
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028127 [exp]	8.1	0.7415
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10007912 [exp]	8.4	0.7013
AT1G80630			RNI-like superfamily protein (...		Lus10041648 [exp]	9.5	0.7118
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	13.3	0.7537
AT5G41350			RING/U-box superfamily protein...		Lus10024635 [exp]	14.0	0.7667
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Lus10018367 [exp]	24.2	0.7216
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Lus10033669 [exp]	26.8	0.6767
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	30.8	0.7050
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	35.0	0.7180
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10009435 [exp]	36.7	0.6794

Compare expression of checked genes

Lus10012205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.