Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52630 742 / 0 MEF1 mitochondrial RNAediting factor 1 (.1) AT3G24000 429 / 4e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 419 / 6e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 407 / 1e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 402 / 1e-131 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 400 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 399 / 4e-129 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 398 / 9e-129 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G25360 396 / 3e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03880 391 / 3e-128 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011323 [exp] 1167 / 0 AT5G52630 790 / 0.0 mitochondrial RNAediting factor 1 (.1) Lus10039117 [exp] 433 / 6e-144 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 427 / 1e-141 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 413 / 9e-136 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001617 [exp] 405 / 2e-133 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040504 [exp] 405 / 4e-133 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 405 / 1e-132 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 405 / 3e-131 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034715 [exp] 392 / 2e-128 AT5G04780 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G053500 [exp] 862 / 0 AT5G52630 785 / 0.0 mitochondrial RNAediting factor 1 (.1) Potri.006G001200 [exp] 446 / 5e-150 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 428 / 5e-141 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G208000 [exp] 420 / 9e-139 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 417 / 4e-138 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086900 [exp] 416 / 5e-137 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 407 / 9e-135 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 411 / 1e-133 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 410 / 2e-133 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 409 / 5e-133 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012206 pacid=23154908 polypeptide=Lus10012206 locus=Lus10012206.g ID=Lus10012206.BGIv1.0 annot-version=v1.0 ATGCTTCTCCACAAAATCCCCTCCAAATCGCTGAAACAACAACCTCCGACGATTCTCTCATCCCTCTTACTCAACGTACTAACCCACCCCACACTTCCCC AAATCGAGCCTCCTCCACAACAACAAACTGCTCACTGTGACAATTTTTCGTTCGAAGAGAAGTACAGGCGCATCTGCACGCTCCTCCTAGCTCAAACCCG ATCCAGAAACCTTCGAAATGGCGTTCAGCTCCATGCCCAGATCGTCAAAGCCGGATTGGGTACAATCCCGCTCGTGTCTCACTACCTCATCAATTTCTAC TCCAAGAACCAGCTGCCGATGCTGTCCGCTTCAGTGTTTGACGAAACCCAGGTAAGATCAGCCACCACTTGGAGCTCTATAATATCTTCTTTAGCTCAGA ATGAGTTGCCCGGTCTTGCAATCGTGTACTTCCGTAAAATGCTCGAGGACGGTTTCTCCCCCGATGACCATATTTACCCTAGCGCGACGAAGGCTTGCGC GAGTATGGGCCGGTGGGATGTCGGGAAATCGGTTCATTGTCATGTGGTGAAGACTGGGTACGATTTTGATGTGTTTGTGGGCAGTTCGTTGGTTGATATG TACTGTAAGTGTGGCAAGTTGGGGGATGCACGCAACCTGTTCGACGAAATGCCTGAGAGAAATGTGGTTTCGTGGAGTGGGATGATCTACGGGTATGCGC AAGTCGGGGAAGACGAGGAGGCATTGAAGCTCTTCAAAGGAGCTTTATATGAAGGGTTGGAAGTCAACGATTTCACCTTCTCGAGCGTTATAAGGGTGTG TGGAGACTCAACGTTGCTCGAGCTTGGGAAGCAGATACACGGGATGTGTTTCAAGACGAGCTACGATTCCTCGAGCTTCGTGGGGAGTTCTCTGGTCTCG TTGTATTCTAGATGCGGAGTTATCGAAGAAGCTTATGTTGTCTTCGACGAGGTGCCTGTGAAGAATCTCGGTATGTGGAATGCTATGCTGATCGCTTGTG CACAGCACGGGCATACGAAGCGAGTGTTCGATCTGTTCGAGAAGTTGCAGAAAGGCAGTGGTATTAACCCGATCAAACCGAATTTCATAACTTTTCTGTG TTTGCTCTATGCTTGTAGCCACTCGGGACTTGTGAAAGAAGGTGAAGGCTATTTCGAGCTAATGAAGAAGAGTAATGTTGAGCCGGGGACTCAACATTAC TCTTCTTTGGTGGGGTTGCTAAGTAGGGCGGGTAAGTTAGAGGAAGCACTCAAGATCATAGACACAATGCCAATCGAGCCAACGGAATCTGTATGGGGAG CGTTCATGACTGGGTGTCGAATCCATGAAAAGACCGAGCTAGCAGCTTATGCAGCTGATCGAGTGTTCCAGCTAGGCGCAGTGAGTCCGGGGCTACACAT TATACTCTCGAACGCTTACGCAGCTGCTGGGAGGTACGAGGACGCAGCGAGAGCAAGGAAGTTGCTTAGGGACCAAGGAATCAAGAAGGAGACCGGGTTA AGCTGGGTTGAGGAAGGGAACAAGGTGCACACATTCGTAGCAGGAGATCGGTCCCACTCAAGGACGAAGGAGATCTACGAGAAGTTGGAAGAGCTAGGGC ACAAAATGGAGGCGGCTGGATACGTTCCGGATACGAGCTTCGTGCTGCGAGAAGTTGGTGGCGAGGAGAAGCATCAAACGATTATGTATCACAGTGAACG TCTAGCAATTGCGTTCGGGCTCATCGCTTTCCCAGACGCTAGTAGGCCGCTTAGGGTTATGAAGAATCTTAGGGTGTGTGGTGATTGTCACACTGCTGTC AAGTTCATGTCCAAGTGCACTGGGAGGGTTATCATTGTTAGGGACAACAACCGGTTCCATCGGTTCGAAGATGGTAAGTGCTCTTGTGGTGACTATTGGT GA
AA sequence Show only first row Show all	>Lus10012206 pacid=23154908 polypeptide=Lus10012206 locus=Lus10012206.g ID=Lus10012206.BGIv1.0 annot-version=v1.0 MLLHKIPSKSLKQQPPTILSSLLLNVLTHPTLPQIEPPPQQQTAHCDNFSFEEKYRRICTLLLAQTRSRNLRNGVQLHAQIVKAGLGTIPLVSHYLINFY SKNQLPMLSASVFDETQVRSATTWSSIISSLAQNELPGLAIVYFRKMLEDGFSPDDHIYPSATKACASMGRWDVGKSVHCHVVKTGYDFDVFVGSSLVDM YCKCGKLGDARNLFDEMPERNVVSWSGMIYGYAQVGEDEEALKLFKGALYEGLEVNDFTFSSVIRVCGDSTLLELGKQIHGMCFKTSYDSSSFVGSSLVS LYSRCGVIEEAYVVFDEVPVKNLGMWNAMLIACAQHGHTKRVFDLFEKLQKGSGINPIKPNFITFLCLLYACSHSGLVKEGEGYFELMKKSNVEPGTQHY SSLVGLLSRAGKLEEALKIIDTMPIEPTESVWGAFMTGCRIHEKTELAAYAADRVFQLGAVSPGLHIILSNAYAAAGRYEDAARARKLLRDQGIKKETGL SWVEEGNKVHTFVAGDRSHSRTKEIYEKLEELGHKMEAAGYVPDTSFVLREVGGEEKHQTIMYHSERLAIAFGLIAFPDASRPLRVMKNLRVCGDCHTAV KFMSKCTGRVIIVRDNNRFHRFEDGKCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10012206 [exp]	0	1
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10038377 [exp]	1.4	0.8080
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10012374 [exp]	2.8	0.7745
AT4G10620			P-loop containing nucleoside t...		Lus10000122 [exp]	4.2	0.7580
AT5G59100			Subtilisin-like serine endopep...		Lus10042555 [exp]	11.7	0.7606
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	12.5	0.7200
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10035312 [exp]	17.1	0.7616
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10000098 [exp]	21.8	0.6461
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	24.5	0.6769
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10017668 [exp]	24.6	0.7583
AT3G19508			unknown protein		Lus10013875 [exp]	25.1	0.6930

Compare expression of checked genes

Lus10012206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.