Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68030 83 / 4e-17 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14770 72 / 6e-13 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT4G12670 62 / 7e-10 Homeodomain-like superfamily protein (.1) AT5G03780 59 / 5e-09 TRFL10 TRF-like 10 (.1) AT1G01150 58 / 1e-08 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011320 [exp] 1230 / 0 AT1G68030 84 / 2e-17 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10026308 [exp] 182 / 3e-51 AT1G01150 63 / 6e-11 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10042361 [exp] 108 / 2e-27 AT1G01150 63 / 2e-12 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10015562 [exp] 63 / 6e-10 AT1G14770 66 / 3e-11 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10024200 [exp] 50 / 4e-06 AT1G15720 65 / 5e-11 TRF-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G053300 [exp] 167 / 5e-43 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G054401 [exp] 157 / 2e-40 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G005600 [exp] 62 / 1e-09 AT5G03780 94 / 1e-20 TRF-like 10 (.1) Potri.001G254300 [exp] 44 / 0.0005 AT5G12400 1020 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012209 pacid=23154958 polypeptide=Lus10012209 locus=Lus10012209.g ID=Lus10012209.BGIv1.0 annot-version=v1.0 ATGTCGGAACCGTCTCCACCCGACGGTGATACGAGCCGTGTATGGTTCTGGCTCATCGAGTACATGGCAAGCTCTCCCCAGATAGACTGCACAACTCTGC ACAATTTGATAGAAGAGGCACCTGAATTACCGAACAATGTGAGGGAAAGGGTTGCTTTAAGGTGCTTAGAGGAATTGTTTGGTACTTCACATGCTGTTGC CCACGAACCTCCATCTGGTACGGAGGCTAAAGTAGTGTTTGAATTGTCATCCACCTGCGAAGATGTGCTCGAATTGATATGCCGGGAGACATCAGATTTG AGAAAGGGTGGACCAGAGCTCTTGAAATGGGATATTCACCCTTTCATTATGCACAAGAAAGCTTCCATGCCTAAGTGTTCTTTCGATCAGCTAAAAGAGA TGACTCGCCAAGGTTCTGTCCCATGTGCTGCATTGTTTTCCCAATTTAGCGGACTGGTTCATGGAAATGATGGTGGCAGTAAATCTACCATGGAAGAACC TGGTCAAAGTGAAGGGCTTAGGACTGACTGTCAAACGGAGGTGTCAAGAGAGGAGTCACTTTCTCAGCCTCCTGCAAATGGGTTAGCTGGAATTGGAGAA AATATGTGTTACAGTAATCTGTCATCATCTGAGAGGGGTGAAATTTGTGGTAACCAGGGTGGAGTGTCCTTGGGTAGGCAAGGAAATGATGCTGCTGCTT ATTGTCAACTAGCAGATGCTGAGAGCATTGAACAGGGCACATTATACACCGAGATGGCTAATAATAACAATTTGGTGGAACATTCTATGCAAGGTAACAT TCAGGTAGGTGAAGATGAGAATTCTGATCTGGGAGCAGAATCTCAAAGGGGAGTAACCATGGAGGGACGTGAGGAATCAGGTCTGTTGTCTAAGGATTTT CTGGCTGCAGCTGACCAGCCAGGGTCAAATCTCTGTGTCAAATGTGGCAAAAATGGTCAGTTGCTGCTTTGCGGTACAGATGGTTGCACTTTCACAATTC ATGGAAGCTGCTTGGGTTTGACACCAAGTTTTGATAACAGAGGACAGTTCTGCTGCCCCTTCTGTGCACATGATCTCGCTATTTCATACTACGAGAAAAT GAAGGAACGGATGGATGTGACATTGAAGCAACTAAGTTCCTTTCTTCGTGGAGGATCAGAGAATCCATCACTGGAACACTCTAAGAGATCCGATGGGAAA GAGAATGGTAAACCAGGGGGTGTAGCTTCCGTTGCTGAAGTCAACAGGATTGAGAATTTGGCAAAGGAAGGAAATCAAACATATAGCGGGAGAGATGTAG ATGAAGTCTATGATTACCTATTTGAGAATGGAGCAGGTAGGTTGCAACATTTTCCTGTGGCTGCCCATGGCATCACTGACAAACCAAATAGTGAAAAAGT TTTGGCAGATGCTACTTGTAATTCAAGAGATAGTGGGGAGAGGCAGATGGAAAGAACAGCTATTGTGTGCCCGTTAGTTAGAGTACCTGAAAGAAGGCAA GACCAAGATATCTCAGACCCTTCACGCCTTGGTGATAAAGTGTCAGAAGAGCAGGATCAAGCTGAAGGAGAGACTACTAAGAAAGTTCCGGACGAGATTG GTGTTCACAAGCAAGTGATGCGTATCCCTGCTGTCCCAACATTTGAGAATGGAGCAGGTAGGTTAAAACTTCCGCCTGTGGCTGCCCATGGCACCGACGG TGAACCAAATAGTGAACAAGGACCGTCAGATACTATTTGTAATTCAAGAGGTAGTGGGGAGAGGCAAATTGAAAGAAAAACTTTTGCGTGCGCATCAGTT AAAGTACCTGAAGGAAAGCAAGACCAAGATCTTCCAGACTCTATGTGCTTGGATGATAATCTATCACGTGAAAAGAAAGATATAACGTCAGAAGAGCAGG ATCAAACTGAAGGAGCAACTAAGAAGAAAGTTCCAGACGCGATTAATGTGCACCAACAAGTGATTCCTATCCCTGCTGTCCCAATAGGTAGGGTAGCCTC CGACGAAGGACATGATCAAACTGCAAGCTCTACCTACTCTTTGCATCTGAGAAAGAGAGAACGGGGTACTTCATTGAATGAACATTATTGTATGAGCAGC GAGGATGCAGCGAGTCCTCGAACACGGAGGCGGAAAGTACTATGGACAGCACCAGAGGAAAATATGTTGAAGGAAGCAGTGCAGAAATTTACCAAAAGTG GAATAACTTCATGGAAAGCCATAATAGAGTATGGGAGGTCTGTTTTTCCTGCTGGTCGTACTTCAGAAGACCTTCGGAGTAAATGGAAGTCAATCTGCAA AGTAAAAGCCCCTAAAAGTCCTTAG
AA sequence Show only first row Show all	>Lus10012209 pacid=23154958 polypeptide=Lus10012209 locus=Lus10012209.g ID=Lus10012209.BGIv1.0 annot-version=v1.0 MSEPSPPDGDTSRVWFWLIEYMASSPQIDCTTLHNLIEEAPELPNNVRERVALRCLEELFGTSHAVAHEPPSGTEAKVVFELSSTCEDVLELICRETSDL RKGGPELLKWDIHPFIMHKKASMPKCSFDQLKEMTRQGSVPCAALFSQFSGLVHGNDGGSKSTMEEPGQSEGLRTDCQTEVSREESLSQPPANGLAGIGE NMCYSNLSSSERGEICGNQGGVSLGRQGNDAAAYCQLADAESIEQGTLYTEMANNNNLVEHSMQGNIQVGEDENSDLGAESQRGVTMEGREESGLLSKDF LAAADQPGSNLCVKCGKNGQLLLCGTDGCTFTIHGSCLGLTPSFDNRGQFCCPFCAHDLAISYYEKMKERMDVTLKQLSSFLRGGSENPSLEHSKRSDGK ENGKPGGVASVAEVNRIENLAKEGNQTYSGRDVDEVYDYLFENGAGRLQHFPVAAHGITDKPNSEKVLADATCNSRDSGERQMERTAIVCPLVRVPERRQ DQDISDPSRLGDKVSEEQDQAEGETTKKVPDEIGVHKQVMRIPAVPTFENGAGRLKLPPVAAHGTDGEPNSEQGPSDTICNSRGSGERQIERKTFACASV KVPEGKQDQDLPDSMCLDDNLSREKKDITSEEQDQTEGATKKKVPDAINVHQQVIPIPAVPIGRVASDEGHDQTASSTYSLHLRKRERGTSLNEHYCMSS EDAASPRTRRRKVLWTAPEENMLKEAVQKFTKSGITSWKAIIEYGRSVFPAGRTSEDLRSKWKSICKVKAPKSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10012209 [exp]	0	1
					Lus10027106 [exp]	13.5	0.7074
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10033281 [exp]	15.5	0.7630
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10039974 [exp]	18.0	0.6955
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10025624 [exp]	20.6	0.7261
					Lus10034709 [exp]	25.2	0.7494
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	27.3	0.7418
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Lus10009008 [exp]	33.2	0.6868
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10013077 [exp]	46.8	0.6551
AT5G11430			SPOC domain / Transcription el...		Lus10008108 [exp]	69.2	0.7211
AT5G23200			unknown protein		Lus10010192 [exp]	88.6	0.6999

Compare expression of checked genes

Lus10012209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.