Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08840 1102 / 0 D-alanine--D-alanine ligase family (.1.2.3) AT3G56190 332 / 1e-105 ASNAP, ALPHA-SNAP2 alpha-soluble NSF attachment protein 2 (.1.2) AT3G56450 213 / 1e-60 ALPHA-SNAP1 alpha-soluble NSF attachment protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001259 [exp] 886 / 0 AT3G08840 1063 / 0.0 D-alanine--D-alanine ligase family (.1.2.3) Lus10001258 [exp] 501 / 2e-170 AT3G56190 360 / 7e-126 alpha-soluble NSF attachment protein 2 (.1.2) Lus10002410 [exp] 365 / 7e-118 AT3G56190 428 / 1e-152 alpha-soluble NSF attachment protein 2 (.1.2) Lus10032835 [exp] 344 / 3e-109 AT3G56190 385 / 6e-135 alpha-soluble NSF attachment protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106000 [exp] 1271 / 0 AT3G08840 1248 / 0.0 D-alanine--D-alanine ligase family (.1.2.3) Potri.016G129900 [exp] 389 / 4e-127 AT3G56190 359 / 2e-125 alpha-soluble NSF attachment protein 2 (.1.2) Potri.008G075400 [exp] 357 / 3e-115 AT3G56190 360 / 6e-126 alpha-soluble NSF attachment protein 2 (.1.2) Potri.010G181900 [exp] 355 / 3e-114 AT3G56190 366 / 3e-128 alpha-soluble NSF attachment protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0483 [flax] [poplar] PreATP-grasp PF01820 [flax] [poplar] Dala_Dala_lig_N D-ala D-ala ligase N-terminus CL0179 [flax] [poplar] ATP-grasp PF07478 [flax] [poplar] Dala_Dala_lig_C D-ala D-ala ligase C-terminus
Representative CDS sequence Show only first row Show all	>Lus10012211 pacid=23172673 polypeptide=Lus10012211 locus=Lus10012211.g ID=Lus10012211.BGIv1.0 annot-version=v1.0 ATGGGAGATCAAATAGCTAAGGGAGAAGAATACGAGAAGAAAGCGGAGAAGAAGATCAGCGGATGGGGGTTGTTTAGCTCCGGTTCTAAGTACGAAGATG CCGCTGAGTTGTATGCTAAATCCGCCAACAGTTTCAAGCTCGCCAAATCATGGGAGAGAGCCGGTTCTGTTTACGTTAAAGTCTCCAATTGTCATCTCAA GTCGGATAGCGATCACGAAGCTGCCAGCGCTCTTGTGGATGCAGCGATTTGCTACAAGAAATCGTCAACTCAACGCGCCATATCGTGTCTGGAGCAAGCA GTAGATATTTATCTGAACATGGGAAGGTATAACATGGCTGCTAAGAATTGCAAGGAAATTGGGGAGTTATATGAGCAAGAACAGAACATCGAGAAGGCTA TTGCATATCTTGAGCGGGCAGCTGACTATTATGAACATCAAGATTCAAGCTCATCCGCTAACCAGTGCAAACAGAAAGTTGCACAATTTTCTGCCCAGCT TGAACAGTATCAGAAAGCAATCCAGGTATATGAAGAGATAGCAAGATACTCACTCAACAGCAACTTGCTCAAATACGGTGTAAGAGGACATCTTCTGAAT GCTGGTCTTTGCCAACTCTGTAGAGGGGACATTGTAGCCATAACCAATGCATTAGACAGATACGAGGACATGGATCCAACTTTCTCCAGAACTCGCGAGT ACAGATTCTTATCAGATTTGGCCACTGCAATGGACGAGGAGGATGTTGAGAAATTTACAGGCATCGTAAAAGAGTTTGACAGTATCAGTAAACTGGGAGA CCATCTGCAAGTGAACTGCTACTACATTGACTTTGATCTCAATGCCTTCGCTATATCCCCTGCCCAGGTATACTCAAATACCCCTGCCGATTTCGACTTT AAGCTTGAAAGTCTCGCCTGGCGTTTTTCGTCTCTATCCGAGTTAACGGAGCACCTTGCTGAATCTGTTGACATAGTGTTCCCTGTGATTCATGGTAAAT TCGGCGAAGATAGTGGCATACAGGAGCTGTTGGAGAAGCACAATATCCCCTTTGTCGGTACAGGATCGAGTGAGTGTCGTCGTGCATTTGACAAGTATGA AGCCTCTTTGGAACTCAGAAAGCAAGGGTTCATTACTGTACCTAGTATTTTAGTTCAGGGTGCTGAAGCGGATGAATCCGAGTTATATAACTGGTTTACA AGTAACCAGCTGGACACCAACTCTGGTAAAGTAGTGGTGAAACCAGTCAGAGCCGGCTCAAGCATTGGTGTATCGGTTGCTTACGGTGTTGCTAATGCCC TAAAGAATGCGAAGGATGTCATATTAGAGAAAGTCATCGTGGAAATCTTTCTCGAAGGAGGAAGTGAATTCACTGCTATTATACTCGATGTAGGTTCCGG AAGTGACTGTCAACCCATTGTTCTAATCCCATCTGAGGTAGAGCTTCATTTTTGTGAAAAGGACGCGATTTTCAATTACAGAAGGAAGTACCTTCCAACT CAACAGGTGTCCTATAATACTCCCCCACGTTTTCCTCTTGAAGTAATAACAAGTATCCGTGAAGGGGCATCTCGGCTCTTCCCACAACTTGGCCTGCGTG ATTTTGCTCGAATCGATGGGTGGTTTCTGCCCTCGTCCACAAACTCATTCCCCGACGCTGATGGAAAGTTTGGGAAGTCTGATTTCGGCACACTGTTATT TACAGATATTAACCTGATTAGTGGAATGGAGCAAACAAGCTTTTTATTTCAGCAAGCGTCAAAGGTTGGATTCTCACATTCAAACATTCTGCGGAGCATC ATTTACCATGCATCTTCAAGGTTTCCCAATCTCGAACCATTTGTTAATACGCCTGGTGATCTGCCTAGAAGATCAAAACCTTTACAGCCTGCTGAAGCTC TAGAAGGAAAAGGTGTACGCAAAGTCTTCGTCATATTTGGAGGAGATTCATCAGAGCGTCAAGTGTCTGTGATGAGTGCAACAAACGTTAAAGTGATCAC TTGTCTGCTTGCACCCTCAAATGATCAGAGTGCGGATGCTAGATCGAGGACTGTGTGGAAATTGCCTTACTCTCTTGTCCTGAGACACACTGTGGAGGAA GTTCTTGATGCCTGCTTCGAGGCAACTGACCCAGCTAGAGCTTCTTTGACATCACAGTTGCACAAGCAAGTGATTCATGAACTAATGGAAGGGGTTAAGA AGCATAGATGGTTTAGTGGGTTTGACATCGCTGATGCATTACCTGAAAACTTCTCTCTCGAGGAATGGATTAAGCACGCAAAGGAAGTCGAAGCAACAGT CTTTCTCTCAGTTCACGGAGGAATCGGTGAAGATGGTACACTTCAGTCTTTGCTGCAGGCTGAAGGAGTTCCATATACAGGTCCTGGAATATCAGCGTCA AAGATTTGCATGGATAAAGTGGCTACATCATTGGCTGTTAGTCATCTTTCAGATTCTGGAGTTCTCACCATAAGCAAAGATGTTAGAACAAAAGAGGATT TGTTGAAGTATCCCTCGTCGAAGATTTGGAGCGAGTTGACCTCAAAGCTTCAGTGTGGAACACTATGTGTGAAACCAGCTAGAGATGGATGCTCAACTGG TGTAGCAAGAATACGTTGTGCAGAGGATCTTGCAGTTTATGTAAAAGCATTGGAGGAATGCCTTCTACGGATTCCACCAAACAGTTTCTCAAAAGCACAT GGAATGATTGAGATGCCAAACCCGCCTCCAGAGAACTTGATCTTCGAGCCATTTATCGAGACAGATGAGATCATCGTCTCGTCGAAATCAGCAGATGGGC TATTTTGGAAAGGGCAGAGCCGCTGGGTCGAAATAACAGTTGGCGTTGTGGGGAAACTGGGTTGCTTGCAATCACTTACTCCAAGCATTACTGTTAAGGA AGGTGGCGACATTTTATCACTGGAAGAGAAATTTCAAGGTGGAACCGGCATCAATCTTACTCCTCCACCACCATCGATCGTCGGTGTGGAGGCACTGGAG AAATGCAAACATCGGATCGAGCTGATAGCAAACACGCTGAAGCTGGAAGGATTTTCCAGAATTGATGCTTTTCTCAATGTCGATAATGGAGAGGTGTTGG TTATAGAGGTGAACACAGTGCCTGGTATGACTCCTTCAACTGTACTGATTCATCGGGCCTTGGCAGAGGAACCTCCAATGTACCCTCATGTGTTCTTCCG CAGGTTGCTTGATTTGGCTTCTGAAAGAATCATTTAG
AA sequence Show only first row Show all	>Lus10012211 pacid=23172673 polypeptide=Lus10012211 locus=Lus10012211.g ID=Lus10012211.BGIv1.0 annot-version=v1.0 MGDQIAKGEEYEKKAEKKISGWGLFSSGSKYEDAAELYAKSANSFKLAKSWERAGSVYVKVSNCHLKSDSDHEAASALVDAAICYKKSSTQRAISCLEQA VDIYLNMGRYNMAAKNCKEIGELYEQEQNIEKAIAYLERAADYYEHQDSSSSANQCKQKVAQFSAQLEQYQKAIQVYEEIARYSLNSNLLKYGVRGHLLN AGLCQLCRGDIVAITNALDRYEDMDPTFSRTREYRFLSDLATAMDEEDVEKFTGIVKEFDSISKLGDHLQVNCYYIDFDLNAFAISPAQVYSNTPADFDF KLESLAWRFSSLSELTEHLAESVDIVFPVIHGKFGEDSGIQELLEKHNIPFVGTGSSECRRAFDKYEASLELRKQGFITVPSILVQGAEADESELYNWFT SNQLDTNSGKVVVKPVRAGSSIGVSVAYGVANALKNAKDVILEKVIVEIFLEGGSEFTAIILDVGSGSDCQPIVLIPSEVELHFCEKDAIFNYRRKYLPT QQVSYNTPPRFPLEVITSIREGASRLFPQLGLRDFARIDGWFLPSSTNSFPDADGKFGKSDFGTLLFTDINLISGMEQTSFLFQQASKVGFSHSNILRSI IYHASSRFPNLEPFVNTPGDLPRRSKPLQPAEALEGKGVRKVFVIFGGDSSERQVSVMSATNVKVITCLLAPSNDQSADARSRTVWKLPYSLVLRHTVEE VLDACFEATDPARASLTSQLHKQVIHELMEGVKKHRWFSGFDIADALPENFSLEEWIKHAKEVEATVFLSVHGGIGEDGTLQSLLQAEGVPYTGPGISAS KICMDKVATSLAVSHLSDSGVLTISKDVRTKEDLLKYPSSKIWSELTSKLQCGTLCVKPARDGCSTGVARIRCAEDLAVYVKALEECLLRIPPNSFSKAH GMIEMPNPPPENLIFEPFIETDEIIVSSKSADGLFWKGQSRWVEITVGVVGKLGCLQSLTPSITVKEGGDILSLEEKFQGGTGINLTPPPPSIVGVEALE KCKHRIELIANTLKLEGFSRIDAFLNVDNGEVLVIEVNTVPGMTPSTVLIHRALAEEPPMYPHVFFRRLLDLASERII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	0	1
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	1.0	0.9455
AT5G26610			D111/G-patch domain-containing...		Lus10001513 [exp]	2.8	0.9234
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	3.2	0.9325
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	3.2	0.9210
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10021580 [exp]	3.9	0.9244
AT3G11290			unknown protein		Lus10002039 [exp]	4.2	0.9180
AT2G43210			Ubiquitin-like superfamily pro...		Lus10026718 [exp]	5.5	0.9118
AT5G01800			saposin B domain-containing pr...		Lus10014162 [exp]	6.0	0.8991
AT5G23250			Succinyl-CoA ligase, alpha sub...		Lus10028767 [exp]	8.4	0.8822
AT1G18720			Protein of unknown function (D...		Lus10036771 [exp]	9.8	0.8850

Compare expression of checked genes

Lus10012211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.