Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10980 585 / 0 SAG20, WI12, ATWI-12 PLAC8 family protein (.1) AT5G05350 580 / 0 PLAC8 family protein (.1) AT1G11380 49 / 5e-06 PLAC8 family protein (.1) AT2G40935 44 / 6e-05 PLAC8 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001260 [exp] 1071 / 0 AT5G05350 584 / 0.0 PLAC8 family protein (.1) Lus10017417 [exp] 565 / 0 AT3G10980 624 / 0.0 PLAC8 family protein (.1) Lus10010219 [exp] 531 / 0 AT3G10980 598 / 0.0 PLAC8 family protein (.1) Lus10018410 [exp] 62 / 2e-10 AT1G11380 270 / 1e-91 PLAC8 family protein (.1) Lus10002586 [exp] 61 / 4e-10 AT1G11380 273 / 1e-92 PLAC8 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G129700 [exp] 677 / 0 AT3G10980 619 / 0.0 PLAC8 family protein (.1) Potri.010G182100 [exp] 588 / 0 AT3G10980 670 / 0.0 PLAC8 family protein (.1) Potri.008G075300 [exp] 516 / 5e-179 AT3G10980 595 / 0.0 PLAC8 family protein (.1) Potri.011G040100 [exp] 64 / 4e-11 AT1G11380 280 / 5e-95 PLAC8 family protein (.1) Potri.004G026700 [exp] 61 / 3e-10 AT1G11380 253 / 8e-85 PLAC8 family protein (.1) Potri.006G024900 [exp] 45 / 4e-05 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11204 [flax] [poplar] DUF2985 Protein of unknown function (DUF2985) PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10012212 pacid=23172651 polypeptide=Lus10012212 locus=Lus10012212.g ID=Lus10012212.BGIv1.0 annot-version=v1.0 ATGGTTTCACATGACAAAGTAGAAGACTGGTCTGAACTCAAGCTGGAACAGCCATCATCATCGGCAAATCTGTCTGATAATAACAAGTCCATTGGCAGTA ACAATGCAACTGTCCTCGACATATCAACTTCTAGGAAGACACTTCTCAACAGCGGCGACACCTCTAGTTCAGGAAGGCTACACTACTTATCAAAAGTTGT CCCAAGTAGGCTACAGATACTGAAACTAACTTCCAGCACCGGTTTAAGTTCTCCATCAGCCAAGTTCAAGCAGATAGCCTTTGAAAGAGATTCAACCTCC CGCTCCGTGCCATCCTCAGGTTTTCGAGAACGACTCCAACGAACCCTATCTCGCAAAATCCAATGGGACTCACTATGGAACATGTTCAAGACATGGGTAA AGAGTCCCTTGAACATGGTCTTACTTCTTTGGATAGTATGCGTCACAGTCTCCGGAGCTTTACTCTTCTTAGTAATGACAGGGATGCTAAACCACGTCAT ACCTAGGAAATCGCAAAGGGACATCTGGTTCGAGGTCAACAACCAAATCCTTAACGCCTTGTTCACTCTCATGTGCTTGTATAATCATCCAAAGCGATTC TACCATCTGGTTCTCCTCTGTAGATGGAAGCCAGAGGACATAACTTCACTCAGGAATGCATACTGCAAAAACGGTACTTACAAACCAAATGAATGGGCTC ACATGTTGGTTGTCATCTCATTGCTACATTTGAACTGCTTTGCTCAGTATGCATTATGCGGCCTTAACTTGGGGTATAGAAGATCATCCAGGCCAGCTAT CGGAGTCGCGATTTGCCTCTCCGTTGCCATAGCTGCCCCAGCTATCGCAAGCCTCTACTGCATTGTCAGTCCTCTTGGCAAGGACTACGAGGACGACAAT GCAGTAGAACAGGAGGACGAAGAATCCCAGACACGACTCACTACCAACAGACAACGCTTGTCGATGGAGAGAAGGTTCTCCTTCGCAACCATCGACGAAG AAAACACCCCAACATGGAGAGGCGGCCTGTTCGATATCTGGGACGACATATCAGGAGCATACCTATCGCTCTTCTGCAGTTTCTGCGTATTCGGATGGAA CATGGAGAGGCTCGGATTCGGGAACATGTACGTCCACATAGCCACATTCCTCCTCTTCTGCTCTGCACCCTTCTGGATCTTCAACCTGGCAGCTGTGAAC ATCGACAACGATACAGCTCGTAGTGCGATGGGGCTGGCCGGGGTGATCCTCTGCGTGTTTGGGATGCTCTACGGTGGGTTCTGGAGGATCCAGATGAGGA AACGGTTCAACCTTCCCGTTAATGAAGAGTGTTGTGGAAACCCTGAGGTTACTGACTGTACACAGTGGCTGTTTTGCTGTTGGTGTTCACTTGCTCAGGA AGTTAGGACGGCTGATTTCTATGATGTTGTGGAGAATAAGTTCAGAATGAAACAGCAGCAGCAGCCAAGGCTTTCACCTCTGTCCCGTGAAGGCAGAGTT GAGCCTGGATTCAGTCCATCAGCATCATCGTCTCCTGCTCCTCCGAATCAGGTTTCGAGGTTGAATTACAGCACGGGGAGGCCGGTGTTTGAAACCCAGC CTCAGATTTCTCAAAAGGATCTTATGGAGCCACCAGTTATGTCAGCAATTCGAAGAGATGATGATGAAACTCAGCTCCCAAAGTGA
AA sequence Show only first row Show all	>Lus10012212 pacid=23172651 polypeptide=Lus10012212 locus=Lus10012212.g ID=Lus10012212.BGIv1.0 annot-version=v1.0 MVSHDKVEDWSELKLEQPSSSANLSDNNKSIGSNNATVLDISTSRKTLLNSGDTSSSGRLHYLSKVVPSRLQILKLTSSTGLSSPSAKFKQIAFERDSTS RSVPSSGFRERLQRTLSRKIQWDSLWNMFKTWVKSPLNMVLLLWIVCVTVSGALLFLVMTGMLNHVIPRKSQRDIWFEVNNQILNALFTLMCLYNHPKRF YHLVLLCRWKPEDITSLRNAYCKNGTYKPNEWAHMLVVISLLHLNCFAQYALCGLNLGYRRSSRPAIGVAICLSVAIAAPAIASLYCIVSPLGKDYEDDN AVEQEDEESQTRLTTNRQRLSMERRFSFATIDEENTPTWRGGLFDIWDDISGAYLSLFCSFCVFGWNMERLGFGNMYVHIATFLLFCSAPFWIFNLAAVN IDNDTARSAMGLAGVILCVFGMLYGGFWRIQMRKRFNLPVNEECCGNPEVTDCTQWLFCCWCSLAQEVRTADFYDVVENKFRMKQQQQPRLSPLSREGRV EPGFSPSASSSPAPPNQVSRLNYSTGRPVFETQPQISQKDLMEPPVMSAIRRDDDETQLPK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	0	1
					Lus10038520 [exp]	1.0	0.9690
AT5G44390			FAD-binding Berberine family p...		Lus10001965 [exp]	2.0	0.9576
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	4.9	0.9613
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	5.5	0.9596
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10026173 [exp]	7.7	0.9416
AT3G19615			unknown protein		Lus10042265 [exp]	7.7	0.9424
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	8.1	0.9563
					Lus10023495 [exp]	8.7	0.9334
					Lus10026081 [exp]	9.8	0.9496
AT3G59310			Eukaryotic protein of unknown ...		Lus10003247 [exp]	10.8	0.9331

Compare expression of checked genes

Lus10012212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.