Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38450 120 / 2e-35 unknown protein AT5G05360 114 / 5e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001262 [exp] 222 / 2e-75 AT2G38450 137 / 2e-42 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128700 [exp] 134 / 1e-40 AT2G38450 144 / 2e-45 unknown protein Potri.008G075000 [exp] 115 / 4e-34 AT2G38450 123 / 1e-37 unknown protein Potri.010G182400 [exp] 115 / 3e-33 AT2G38450 136 / 4e-42 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08238 [flax] [poplar] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Lus10012213 pacid=23172715 polypeptide=Lus10012213 locus=Lus10012213.g ID=Lus10012213.BGIv1.0 annot-version=v1.0 ATGGGAAAATCGCCTGCCGCCATATCCAAGCTGCCCAATCTCGTCTCCAATCTCGTAAACCAGTCGAAACCCACATCCCGATTCAGTAGATTCGTCGGAG TAGAGGAAGAGAAGTTGAGAAGCAGCGGGAAGGAGGCGAATAAGACGGCGGCGATGGAGACCAGCAGCTCCGACGTTGAAGGCGGGAGCAGCAGCAGCGG AAGCGTCCGGGTGCCGCTGTCGGAAGTCGTGACAGATTGCGTGAAGCGGTGGTTCAAGGACACCCTCAAGGAAGCTAAAGGTGGAGACATTAACATGCAG GTCTTGGTCAGTCAAATGTATTACAGCGGCTATGGTGTAACCCAGGACCCCCAAAAGGGAAAAGTATGGATGACAAGAGCAGCAAGGACTCGGTCATCAG TTTGGAAAGTCAGCGACAAACGTCCTGGTTATAATGCTAGTGATTCAGACTCGGATGAACTAAAGGACGATTCTTGA
AA sequence Show only first row Show all	>Lus10012213 pacid=23172715 polypeptide=Lus10012213 locus=Lus10012213.g ID=Lus10012213.BGIv1.0 annot-version=v1.0 MGKSPAAISKLPNLVSNLVNQSKPTSRFSRFVGVEEEKLRSSGKEANKTAAMETSSSDVEGGSSSSGSVRVPLSEVVTDCVKRWFKDTLKEAKGGDINMQ VLVSQMYYSGYGVTQDPQKGKVWMTRAARTRSSVWKVSDKRPGYNASDSDSDELKDDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05360			unknown protein		Lus10012213 [exp]	0	1
AT3G02710			ARM repeat superfamily protein...		Lus10026721 [exp]	2.0	0.9026
AT4G29490			Metallopeptidase M24 family pr...		Lus10008578 [exp]	2.2	0.9035
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Lus10038889 [exp]	2.4	0.8964
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10034210 [exp]	5.5	0.8940
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Lus10015009 [exp]	6.6	0.8793
AT5G28060			Ribosomal protein S24e family ...		Lus10015941 [exp]	9.2	0.8673
AT5G03430			phosphoadenosine phosphosulfat...		Lus10013826 [exp]	9.9	0.8896
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	10.4	0.8956
AT5G22720			F-box/RNI-like superfamily pro...		Lus10024696 [exp]	10.6	0.8531
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10022383 [exp]	13.2	0.8916

Compare expression of checked genes

Lus10012213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.