Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01720 684 / 0 RNI-like superfamily protein (.1) AT2G38460 465 / 9e-153 FPN1, ATIREG1 FERROPORTIN 1, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 1, iron regulated 1 (.1) AT5G03570 460 / 5e-151 FPN2, ATIREG2 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2) AT5G27920 337 / 1e-102 F-box family protein (.1) AT4G15475 145 / 7e-36 F-box/RNI-like superfamily protein (.1) AT5G25350 124 / 4e-29 EBF2 EIN3-binding F box protein 2 (.1) AT2G25490 100 / 3e-21 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G23340 97 / 8e-21 RNI-like superfamily protein (.1) AT1G77000 88 / 3e-18 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G21410 84 / 5e-17 SKP2A F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001264 [exp] 1105 / 0 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10001263 [exp] 739 / 0 AT2G38460 602 / 0.0 FERROPORTIN 1, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 1, iron regulated 1 (.1) Lus10029869 [exp] 274 / 2e-81 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10012764 [exp] 167 / 7e-42 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 125 / 8e-29 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10030102 [exp] 119 / 4e-27 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 118 / 6e-27 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10013444 [exp] 110 / 3e-25 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10002165 [exp] 112 / 4e-25 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128400 [exp] 920 / 0 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 898 / 0 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 712 / 0 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.016G128500 [exp] 535 / 6e-180 AT5G03570 588 / 0.0 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2) Potri.016G128600 [exp] 532 / 1e-178 AT5G03570 610 / 0.0 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2) Potri.013G013100 [exp] 374 / 2e-116 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G022600 [exp] 347 / 3e-106 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G254100 [exp] 122 / 3e-28 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 116 / 2e-26 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 115 / 3e-26 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06963 [flax] [poplar] FPN1 Ferroportin1 (FPN1)
Representative CDS sequence Show only first row Show all	>Lus10012214 pacid=23172698 polypeptide=Lus10012214 locus=Lus10012214.g ID=Lus10012214.BGIv1.0 annot-version=v1.0 ATGGACACAGCATTGATCGCCAACGACGACGAAGAACAATTCGAACCTTCTTCGCCTTCGTCTTCCTCTCCTCCGCCTCTGCCAACTTCTCTCATCAGAA ACCTCTACATCGCCCATTTCTTCGCCAGATGGGACGCCAGGATGTGGGAGTTCTCCGTCGGGCTGTACATGATCCATCTCTGGCCCGATTCGCTAATCCT GGCGGCGGTGTACGGCGCCGTCGAATCCGCTTCCACCGCGCTCTTCGGCTCCCTCGTTGGCCAATGGATTGAGCGCCTCGCTTACATCCAGATTCTTAGA ATTTGGTTGGTGACTCAGAATCTCTCCTTCGTAGTTGCTGGAACTACTGTAGTTGTCTTGTTGCTCTCTGCGACTTTGAACTCCACAGCCTTCATCTCAC TTGTTGCATTAGCCAATGTCTCTGGAGCCATTGGAGTTCTTTCTACCCTTGCTGGCACTATCTTGATCGAAAGAGAATGGGTGGTGGTGATTTCAGAAGG GCATCCTCCAGACGTGCTGACAAGTTTGAATTCGACAATCAGACGTATTGATCTGAGCTGCAAGCTACTCGCACCGGTGGTATCCGGCTTCATCATCAGC TTCGTATCGATACAAGCATCAGCCATGGTTCTAGCTTGCTGGAACACTGTAGCTGTATGGCTTGAATATGTGCTCTTCATGTCTGTGTATAAAGGGGTTC CAGCTTTAAGGGAGAGCAATCAGAAGAGGGTTGCGAGATACTATCCTAGTAGTGATGATCATGTTTCGGAAACTGGCTCCTCCAGTAGTACTGTACCCTT ACTAGCTCCAGAAACAGTGAGCTCATCAGCAAATGCACCTTTTTTTGGAGCTTGGAGAGTGTACTTAAGACAGAATGTTGTGCTCCCTGGCGTAGCTCTT GCTTTGCTTTACTTCACTGTCCTCAGCAACCTTAGAATGGCAAGGCATTCCTGCGTATGTAATCGGGTTAGCTCGTGGCATAAGCGCTATCATTGGAATA TCTGCTACTTTTGTATATCCGGTCATGCAATCTCAGCTGTCAACTCTCAGAACAGGACTCTGTGGACTTGCCTTCTTGTATGTGTTGGTGCAATATGGGT CCATAGCCAGACTCTATCAGCATACATGCTCATGGCTGGTGTCGCAACCTCTCGACTCGGATTATGGATGTTCGACTTATCCGTCATCCAGCAAATGCAG GACCATGTGGCTGAAACTGATCGTTGCATAGTGGGAGGTGTACAGAACTCTCTGCAATCCGCTCTGAATCTGTTGGGTTACCTAATGGGAATAATCATCT CAAACCCGCAGGATTTCTGGAAGCTGAGTTTGACATCAGTCATTGCCGTAACCGTAGCTGCCATCCTCTACAGCATACACATCTACCGGGTTCGAAACCA CCTTATTCATTTCGAAAAACTGGTTATGCTGGCAAGATGGGCAATGAGGCACCGCCAGACTGTCAAGCCCCTCCGCCACGAGCACCTCCCGAGGATTCTC TCCCGCTACCGCAGCGTGTCGTCTCTTGATCTCTCGCTCTGTCCGCGGATCAGCGACGGCTCGCTGTCTGTGATCGCTACCTGCTGCGGGGAGACGCTCA GGTCGATCGACCTGTCACGTTCGCGGTTTTTCTCTTATGCTGGATTGATGAGCCTGGCTGTGAACTGTAGGAATTTGGTGGAGATCGATCTGTCCAATGG GACGGAGCTCAGGGACGCGGCGGCGTCCGCTGTGGCGGAAGCTAAGAATTTGGAGAGGCTGTGGTTGGGGAGGTGTAAGTTGATTACGGATATGGGAGTT GGTTGTATCGCTGTTGGCTGTAAGAAGTTGAGGCTGATTAGCTTGAAGTGGTGTTTAGGTGTTACTGATTTGGGCGTTGGATTGATCGCTGTTAAGTGTA AGGAGCTTCGGAGTTTGGATCTCTCTTACTTGCCGATTACAAATAAATGTTTACCAGCCATTTTGAAACTACAATACCTTGAAGATCTGATTCTAGAAGG ATGCTTTGGTATTGACGATGATGGACTTGCTGCGGCCAAACATGGCTGCAAATCACTCAAGATGCTTGATATTTCTAGCTGTCAGACCATTAGCCATGTT GGTTTATCTTCCTTAATCAGTGGCGGTGAGAGTCTTCAGCAGCTCACTTTAGCTTATGGATCTCCAGTCACTCTCTTTCATGCTAATAGCTTGAAGATGT TAGCGGTGCTCCAATCTCTCAAACTAGATGGTTGTTTGATTACCTCTGATGGGTTAAAGGCCCTTGGAGACTTACGTTCATCATTAACAGAGCTGAGTCT AAGCAAGTGTATGGGAGTGACAGATGAAGGTCTTTCGTTCCTTGTCACAAAGCATAGAGATTTGAAGAAACTCGATATCACCTGTTGCCGTAGGATAACC GACGTTTCAATCGCCAATATTGCAAACACATGTACCAATCTAACTTCTTTCAAAATGGAGTCATGTACTCTGGTTCCTAGAGAAGCATTCGTCTTGATTG GTCAAAGGTGTCATTTTCTTGAAGAGCTCGATCTAACCGATAACGAGATCGATGATGAAGGTCTGAAGTCCATTTCAAGGTGTTACAGACTCTCTAGCTT GAAATTGGGAATTTGCCTGAATATAAGCGATGATGGACTTTCTCATATTGGGATTCACTGCTCAAAGCTCACGGAGCTTGACCTCTACAGGTCAGCTGGA ATTGGCGATTCAGGAATTTTAGCGATTGCTTCCGGCTGTCCCGATCTCGAGATTATCAACGTGTCGTATTGCAAGGACATCACAGACAGTTCCCTCATAT CTCTATCAAAATGCTTACGACTGAATACATTTGAGAGCAGAGGATGTCCTTTGATCACATCTTTAGGACTAGCAGCCATAGCCGTAGGATGCAGGCAACT CAGCAAGCTAGACATAAAGAAGTGTCACAGCATTGACGACGCAGGGATGCTTCCGCTCGCTCACTTCTCTCAAAGCCTCCGGCAGATTATCTTGTCGTAT ACTTCAGTCACCGATGTAGGGCTGCTTTCACTTGCCAGCATCAGCTGCCTGCAAAGCATGACTGTCTTACACTTGAACGGCTTAACTGCCAATGGATTGA CAGCTGCCTTGCTGGCCTGTGGCGGACTCGTAAAAGTGAAACTCCACGCTTCTTTCAAACAATTGCTTCCCCCCCTTCTTTTCGAACATTTGGAAGCTCG AGGGTGCTCGTTCGAATGGCGAGATAAAGAGTTCCAAGCTGAACTAGATCCACAGTGCTGGAAGCTTCAATTGGAGGATGTGGCTCATTAG
AA sequence Show only first row Show all	>Lus10012214 pacid=23172698 polypeptide=Lus10012214 locus=Lus10012214.g ID=Lus10012214.BGIv1.0 annot-version=v1.0 MDTALIANDDEEQFEPSSPSSSSPPPLPTSLIRNLYIAHFFARWDARMWEFSVGLYMIHLWPDSLILAAVYGAVESASTALFGSLVGQWIERLAYIQILR IWLVTQNLSFVVAGTTVVVLLLSATLNSTAFISLVALANVSGAIGVLSTLAGTILIEREWVVVISEGHPPDVLTSLNSTIRRIDLSCKLLAPVVSGFIIS FVSIQASAMVLACWNTVAVWLEYVLFMSVYKGVPALRESNQKRVARYYPSSDDHVSETGSSSSTVPLLAPETVSSSANAPFFGAWRVYLRQNVVLPGVAL ALLYFTVLSNLRMARHSCVCNRVSSWHKRYHWNICYFCISGHAISAVNSQNRTLWTCLLVCVGAIWVHSQTLSAYMLMAGVATSRLGLWMFDLSVIQQMQ DHVAETDRCIVGGVQNSLQSALNLLGYLMGIIISNPQDFWKLSLTSVIAVTVAAILYSIHIYRVRNHLIHFEKLVMLARWAMRHRQTVKPLRHEHLPRIL SRYRSVSSLDLSLCPRISDGSLSVIATCCGETLRSIDLSRSRFFSYAGLMSLAVNCRNLVEIDLSNGTELRDAAASAVAEAKNLERLWLGRCKLITDMGV GCIAVGCKKLRLISLKWCLGVTDLGVGLIAVKCKELRSLDLSYLPITNKCLPAILKLQYLEDLILEGCFGIDDDGLAAAKHGCKSLKMLDISSCQTISHV GLSSLISGGESLQQLTLAYGSPVTLFHANSLKMLAVLQSLKLDGCLITSDGLKALGDLRSSLTELSLSKCMGVTDEGLSFLVTKHRDLKKLDITCCRRIT DVSIANIANTCTNLTSFKMESCTLVPREAFVLIGQRCHFLEELDLTDNEIDDEGLKSISRCYRLSSLKLGICLNISDDGLSHIGIHCSKLTELDLYRSAG IGDSGILAIASGCPDLEIINVSYCKDITDSSLISLSKCLRLNTFESRGCPLITSLGLAAIAVGCRQLSKLDIKKCHSIDDAGMLPLAHFSQSLRQIILSY TSVTDVGLLSLASISCLQSMTVLHLNGLTANGLTAALLACGGLVKVKLHASFKQLLPPLLFEHLEARGCSFEWRDKEFQAELDPQCWKLQLEDVAH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01720			RNI-like superfamily protein (...		Lus10012214 [exp]	0	1
AT5G01720			RNI-like superfamily protein (...		Lus10001264 [exp]	1.0	0.8334
AT5G07360			Amidase family protein (.1.2)		Lus10043019 [exp]	4.0	0.7683
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10026607 [exp]	12.0	0.7247
AT5G52450			MATE efflux family protein (.1...		Lus10017998 [exp]	15.9	0.7159
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10014535 [exp]	16.5	0.7341
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013804 [exp]	17.0	0.7009
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	20.8	0.7191
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10027807 [exp]	22.3	0.6752
AT3G13670			Protein kinase family protein ...		Lus10013737 [exp]	39.5	0.6716
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033209 [exp]	41.3	0.6859

Compare expression of checked genes

Lus10012214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.