Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38470 352 / 2e-115 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT5G07100 268 / 1e-85 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G30250 259 / 2e-81 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT4G26640 254 / 2e-78 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT1G13960 253 / 1e-77 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G03340 252 / 4e-77 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT4G26440 238 / 2e-71 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT3G01080 227 / 2e-68 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT2G04880 206 / 2e-60 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT5G56270 171 / 9e-46 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001265 [exp] 748 / 0 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10042243 [exp] 347 / 5e-114 AT5G07100 323 / 5e-105 WRKY DNA-binding protein 26 (.1.2) Lus10030424 [exp] 269 / 3e-84 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10026634 [exp] 267 / 1e-83 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10027139 [exp] 268 / 3e-81 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10032887 [exp] 268 / 3e-81 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10016595 [exp] 264 / 4e-81 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10032580 [exp] 253 / 1e-78 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2) Lus10037131 [exp] 251 / 1e-77 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128300 [exp] 460 / 7e-157 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.006G105300 [exp] 412 / 2e-138 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1) Potri.013G153400 [exp] 396 / 7e-132 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.019G123500 [exp] 385 / 3e-127 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.010G163000 [exp] 275 / 5e-86 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.008G091900 [exp] 264 / 5e-82 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.001G361600 [exp] 254 / 3e-77 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 249 / 2e-75 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.004G120800 [exp] 233 / 1e-69 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.019G053900 [exp] 216 / 2e-63 AT5G56270 154 / 5e-40 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10012215 pacid=23172711 polypeptide=Lus10012215 locus=Lus10012215.g ID=Lus10012215.BGIv1.0 annot-version=v1.0 ATGACTTCTTCCTCCTTCAACACCAACAACAGTAACAGTAACAGCAGAGAAATGGACACCATCAACTGGGGAGCTTACAGTACCACCAACAATCATCATC ACCATATGAACAGAAATGGAAACAACATCAATGGAGGAGGAGTTGAAGCTCCGAAATTCAAGTCGTTCCCGCCACCTTCCTTGCCTCTTTCTCCTCCTCC GTTGTCTCCTGCTTCCTACTTCGCCTTCCCTCCTGGCTTAAGCCCCTCCGACCTCCTCGATTCCCCTGTTCTCTTCTCCTCTGCAACTAATCTTCTTCCG TCTCCGACCACCGGAGCATTCGCCGGCCAGAGTTTCAATTGGAGGACCGATTTCTCCGATTCCTCCGTCGCCGGCGGAAATAATCAGCAGAAGAGTAAAG ACGAAACTAACCATTCCGATTTCTCTTTCCAGCCGCAAACCAGACCGAATTCCTCAACGGATTGGGGATTCAACAAACAAGCAACGAACACTTCTTCTTC AGCGGAGATGGTGCCCAAATCGGAATTCGCAAGCTTCACATCCGAAACGGCGCCGTATCGATCCACCACTAATAACCAGACTCAGACGGCTCATTACATG AGGGAGAGCAGGAGATCGGACGACGGGTACAACTGGAGGAAGTACGGGCAGAAGCAGGTGAAAGGGAGCGAGAATCCGAGGAGCTATTACAAGTGCACTT ATCCCAACTGTCCCACGAAGAAGAAAGTGGAGAGGTCGTTGGATGGTCAAATCACTGAGATTGTTTACAAAGGCAGCCATAACCATCCTAAGCCTCAGTC AACAAAGCAGCAGCAATCTGTACAGCCTTCTTCCATCGTTAGTGCGAACAGCGGCAGCCATGAGATTGGTGGTGGTGATCATTTGTCTGGGATGACGGGA CAGGATGATGTCTCTTCGATTTCCATCGGAGGGGAGGATGAGTTTGATCAGAGCTCGCCGCTTAGCCATTCTGGTGGTGGTGGTGGGGCTGATGGGGATG ATAGTCAGGAACCTGATGCTAAAAGATGGAAGGGGCAGAATGAGAGTGAGAGCATGATGGGTAATGGGAGCAGGACAGTAAGAGAACCAAGGGTTGTGGT GCAGACAACAAGCGACATCGACATACTTGATGACGGATACAGGTGGAGGAAATATGGACAGAAAGTCGTCAAAGGAAATCCCAACCCAAGGAGCTACTAC AAATGCACATTCGTAGGATGTCCTGTCAGGAAACATGTGGAGAGAGCTTCACACGACTTTAGAGCTGTGATCACCACCTACGAAGGGAAACACAACCACG ACGTTCCTGCAGCGAGAGGTAGCGGTTATGTCACCACGTCCAGACCGGTTGCGACGAACGTGAACAACAACCCTGCTCCGATAAGGCCAGCTGTCATCGC TAACCATTCGAGCAACAATAACAACACAAGCTACGGCCAGAACTCTATGAACACGACGAGTTCGGGACCATTCAATTTGGAGATGCTGCAGAGTCAGGGG AGTTTTGGGTTCTCAGGTTTCGGTAGCAGGCAAGCAGGATCGACGAATTCGAATCCTTACATGAATCAGTCTGGCCAGTACTCGAACGTCGCCAAGGAAG AACCTAAGGAGGATACGTTCTTTGATTCACTACTGAGTTGA
AA sequence Show only first row Show all	>Lus10012215 pacid=23172711 polypeptide=Lus10012215 locus=Lus10012215.g ID=Lus10012215.BGIv1.0 annot-version=v1.0 MTSSSFNTNNSNSNSREMDTINWGAYSTTNNHHHHMNRNGNNINGGGVEAPKFKSFPPPSLPLSPPPLSPASYFAFPPGLSPSDLLDSPVLFSSATNLLP SPTTGAFAGQSFNWRTDFSDSSVAGGNNQQKSKDETNHSDFSFQPQTRPNSSTDWGFNKQATNTSSSAEMVPKSEFASFTSETAPYRSTTNNQTQTAHYM RESRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTKQQQSVQPSSIVSANSGSHEIGGGDHLSGMTG QDDVSSISIGGEDEFDQSSPLSHSGGGGGADGDDSQEPDAKRWKGQNESESMMGNGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY KCTFVGCPVRKHVERASHDFRAVITTYEGKHNHDVPAARGSGYVTTSRPVATNVNNNPAPIRPAVIANHSSNNNNTSYGQNSMNTTSSGPFNLEMLQSQG SFGFSGFGSRQAGSTNSNPYMNQSGQYSNVAKEEPKEDTFFDSLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10012215 [exp]	0	1
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10001265 [exp]	1.0	0.9838
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10014168 [exp]	1.7	0.9570
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	2.4	0.9583
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	2.8	0.9491
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10002309 [exp]	3.2	0.9468
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10024139 [exp]	3.5	0.9154
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036519 [exp]	4.8	0.8455
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10032277 [exp]	8.4	0.8924
					Lus10039442 [exp]	9.4	0.8917
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	11.0	0.8606

Compare expression of checked genes

Lus10012215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.