Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38480 149 / 2e-45 Uncharacterised protein family (UPF0497) (.1) AT2G36330 71 / 1e-14 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001266 [exp] 354 / 8e-126 AT2G38480 168 / 8e-53 Uncharacterised protein family (UPF0497) (.1) Lus10002372 [exp] 64 / 6e-12 AT2G36330 224 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Lus10042123 [exp] 62 / 4e-11 AT2G36330 228 / 2e-73 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128200 [exp] 185 / 2e-59 AT2G38480 164 / 2e-51 Uncharacterised protein family (UPF0497) (.1) Potri.012G079800 [exp] 71 / 1e-14 AT2G36330 218 / 3e-70 Uncharacterised protein family (UPF0497) (.1) Potri.015G075100 [exp] 64 / 3e-12 AT2G36330 247 / 3e-81 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10012216 pacid=23172671 polypeptide=Lus10012216 locus=Lus10012216.g ID=Lus10012216.BGIv1.0 annot-version=v1.0 ATGTCGAATTTCGATGATACGCCGCCGCATAATCATCAGAAGGACGGCGACGAGTCCCACCCCTCTCCCCCGATTCTGCCTCCACCGCCGGGGGCTGGGA TCGCCGCCCATCCGACGACGTTCGGGCCGCCTGCGGATGTGGAGGCGGGGTTCGGCGTCGGAGGAATCATGAGGCGGTGGAGAAGGGAGAATCGGTTGAG TAAAGCTTCGGTGATAGTCAGAGGAGCTGGATTCGTCTTCTCTCTGTTCGGGTTCGTAATCATGGCCAGTAACCAGCACGGCGACTGGATGACTTTCAGC CGATACGAAGAGTACAGGTATTTGGTGGCGATTACAATACTCACGACACTATACGCCGGAGCTCAGGCTTTCCGGCAGCTTCACGAGCTTTACTCCGGGA GATACTCAATCCCTCTTCCCCGGAGAACCTCCGCCATCGTCGACTTCTGCGGCGATCAGGTGGCATCGTACATGCTGATGTCAGCAGCTTCGTCAGCAAT CCCGATGACGAACAGGATGAGAGAAGGCGCAGACAACATTTTCACAGATTCATCGGCAGCAGCCATTAGTATGACACTTCTAGCATTCATTGGACTTGCA GCTTCCTCCATCATTTCTGCACATAAGTGCTTCACTCAAGCTTACATTTAG
AA sequence Show only first row Show all	>Lus10012216 pacid=23172671 polypeptide=Lus10012216 locus=Lus10012216.g ID=Lus10012216.BGIv1.0 annot-version=v1.0 MSNFDDTPPHNHQKDGDESHPSPPILPPPPGAGIAAHPTTFGPPADVEAGFGVGGIMRRWRRENRLSKASVIVRGAGFVFSLFGFVIMASNQHGDWMTFS RYEEYRYLVAITILTTLYAGAQAFRQLHELYSGRYSIPLPRRTSAIVDFCGDQVASYMLMSAASSAIPMTNRMREGADNIFTDSSAAAISMTLLAFIGLA ASSIISAHKCFTQAYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38480			Uncharacterised protein family...		Lus10012216 [exp]	0	1
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10034598 [exp]	2.0	0.8837
AT4G13530			unknown protein		Lus10003531 [exp]	3.5	0.8668
AT2G38480			Uncharacterised protein family...		Lus10001266 [exp]	3.6	0.8887
AT4G36660			Protein of unknown function (D...		Lus10010810 [exp]	4.5	0.8561
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	5.3	0.8635
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	6.5	0.8406
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10028862 [exp]	7.2	0.8001
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10029123 [exp]	8.9	0.8401
AT4G21215			unknown protein		Lus10018373 [exp]	16.3	0.8177
AT2G37480			unknown protein		Lus10024420 [exp]	17.3	0.8403

Compare expression of checked genes

Lus10012216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.