Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01710 727 / 0 methyltransferases (.1) AT3G53400 128 / 4e-32 unknown protein AT5G03190 126 / 2e-31 CPuORF47 conserved peptide upstream open reading frame 47 (.1.2.3) AT1G24480 110 / 2e-27 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G24805 106 / 8e-26 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G58120 82 / 2e-16 unknown protein AT2G16030 61 / 4e-10 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26730 42 / 0.0004 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001267 [exp] 993 / 0 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10014232 [exp] 780 / 0 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10022682 [exp] 755 / 0 AT5G01710 698 / 0.0 methyltransferases (.1) Lus10019932 [exp] 141 / 1e-36 AT3G53400 385 / 1e-130 unknown protein Lus10026502 [exp] 137 / 4e-35 AT3G53400 392 / 1e-133 unknown protein Lus10036941 [exp] 108 / 3e-26 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006247 [exp] 107 / 3e-26 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013662 [exp] 101 / 8e-24 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022081 [exp] 86 / 1e-17 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128100 [exp] 753 / 0 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.006G105100 [exp] 734 / 0 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.013G153300 [exp] 520 / 0 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.006G128800 [exp] 153 / 6e-41 AT3G53400 418 / 3e-143 unknown protein Potri.016G088900 [exp] 151 / 3e-40 AT3G53400 420 / 6e-144 unknown protein Potri.010G052100 [exp] 114 / 8e-29 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G088400 [exp] 107 / 4e-26 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G047700 [exp] 95 / 6e-21 AT1G58120 254 / 6e-81 unknown protein Potri.007G113200 [exp] 94 / 1e-20 AT1G58120 252 / 6e-80 unknown protein Potri.002G104500 [exp] 91 / 2e-19 AT1G58120 283 / 1e-91 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10012217 pacid=23172648 polypeptide=Lus10012217 locus=Lus10012217.g ID=Lus10012217.BGIv1.0 annot-version=v1.0 ATGGAGGGAAAGCCCAGCTTTCTCCGGAACATCTTCACCCGGGTGCTCTTCTTCGGCGTCCTCCTCATCGTCGTCCGCTTCGCTTACGTCGTCACCATCA CTGGCGAGTCCTGCAACGTCGGCAGCTTCTGCTTCTTCGCCTTGCCGGAGAATTTCAACTTCGTCATTCCCGGCGGCGGAGCCGGTGCCGGAGGATCCAA CAAAGCTGTCCGATCTCAGCAGAGTAATGCGGCGAGAAACGAGCTGTACACCAGTAAAGACTGGATCAAATCTGTCCAGTTCTACTCCTCGATTTTCCAA GATCTGATCTCCGACGGATTCCTGTCCCCAACCTCCAAATCCTTATGCGTCGAGACGCCGTTGGGGCAGGAAGTCTTCGCTCTCAAAGAGATCGGAGTTA CAGACTCGATCGGCCTCTTCAAAAAGGCCTCCAAGCCGCTGGTGATCTCCAGCAAACTGAATCGCATTCCGTTCAAGGAGAACACTTTCGACTTCGTCTT CTCCGGAGGAGGCCGATACGACGCTGTTTTACGCCCCTTAGATTTGGCGACGGAGATTACAAGGACGCTGAAACCCCAAGGATTTCTCGTCGTCCATGTC AGAGCAAACGATACATACAGTTTCGATTCATTTCTTGATTTATTCAACTCTTGTAAATTGATACGATCTCGCGATCTGGACGGCTCCGATTCGAAGCTTC CGTTCATCAGAGAGATCGTTCTGCAAAAAACACACACTCAAATTCATCGCCGCCGGGAGCAATCATCCGGTACGTGCTCTGTTCCGGTGCATAAAATGGA GCTGGTTCGTGTAGCTGAGCCGTTGATTGATACAGAGCCGAAGAAGCCGTGGATTACACTGAAGAGGAACATACAGAACATAAAGTATCTACCTTCAATG GCGGACATAAGCTTCAAGAACAGGTATGTTTACGTCGACGTTGGAGCAAGAAGCTACGGCTCCAGCATTGGAAGCTGGTTCAGGAAGCAGTATCCGAAAC AGAACAAGACGTTTGAAATCTACGCGGTCGAGGCCGATAAGCATTTCCACGAAGAGTATAAGCTGAAGAAGAATGTTCATCTCCTGCCGTACGCTGCCTG GGTGAAGAACGAGACATTGTCGTTCGAAATCAACCGCGATCCCGGCGAGCAGGTCAAGGATAAAGGGAGAGGCATGGGGAGGATTCAGCCAGTGACGGCT TCGACTAGCTTTGATGGGGTGGTTGATGAGATTCAAGGGTTCGATTTCGCCAAATGGTTGAAGAGGACAGTGACTGAGAAGGACTTTGTGGTGATGAAGA TGGATGTGGAAGGGACCGAGTTTGATTTGATTCCGAGGCTGGTTAAGACCGGAGCGATTTGTTTGATCGACGAGCTGTTTCTGGAATGCCATTACAATAG GTGGCAGAGATGCTGCCCTGGCGAGAGGAGTCCGAAATATGAGAGGACGTACGAGCAGTGCTTGGATTTGTTCACTACTTTGAGAGAGAGTGGAGTTCTT GTTCATCAATGGTGGTGA
AA sequence Show only first row Show all	>Lus10012217 pacid=23172648 polypeptide=Lus10012217 locus=Lus10012217.g ID=Lus10012217.BGIv1.0 annot-version=v1.0 MEGKPSFLRNIFTRVLFFGVLLIVVRFAYVVTITGESCNVGSFCFFALPENFNFVIPGGGAGAGGSNKAVRSQQSNAARNELYTSKDWIKSVQFYSSIFQ DLISDGFLSPTSKSLCVETPLGQEVFALKEIGVTDSIGLFKKASKPLVISSKLNRIPFKENTFDFVFSGGGRYDAVLRPLDLATEITRTLKPQGFLVVHV RANDTYSFDSFLDLFNSCKLIRSRDLDGSDSKLPFIREIVLQKTHTQIHRRREQSSGTCSVPVHKMELVRVAEPLIDTEPKKPWITLKRNIQNIKYLPSM ADISFKNRYVYVDVGARSYGSSIGSWFRKQYPKQNKTFEIYAVEADKHFHEEYKLKKNVHLLPYAAWVKNETLSFEINRDPGEQVKDKGRGMGRIQPVTA STSFDGVVDEIQGFDFAKWLKRTVTEKDFVVMKMDVEGTEFDLIPRLVKTGAICLIDELFLECHYNRWQRCCPGERSPKYERTYEQCLDLFTTLRESGVL VHQWW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01710			methyltransferases (.1)		Lus10012217 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022728 [exp]	1.4	0.8940
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10026428 [exp]	1.7	0.9085
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10037102 [exp]	3.3	0.8700
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	4.2	0.8750
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	6.0	0.8805
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10008615 [exp]	7.7	0.8729
AT4G24805			S-adenosyl-L-methionine-depend...		Lus10013662 [exp]	7.9	0.8481
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10000046 [exp]	9.2	0.8158
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10028373 [exp]	9.5	0.8776
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040745 [exp]	11.8	0.8515

Compare expression of checked genes

Lus10012217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.