Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36250 353 / 2e-118 Protein phosphatase 2C family protein (.1) AT5G01700 347 / 1e-116 Protein phosphatase 2C family protein (.1.2) AT3G02750 333 / 7e-110 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 332 / 2e-109 Protein phosphatase 2C family protein (.1) AT1G79630 332 / 2e-109 Protein phosphatase 2C family protein (.1.2.3) AT4G03415 320 / 3e-105 Protein phosphatase 2C family protein (.1.2) AT1G03590 317 / 5e-104 Protein phosphatase 2C family protein (.1) AT5G27930 281 / 5e-91 Protein phosphatase 2C family protein (.1.2) AT3G16800 274 / 9e-89 Protein phosphatase 2C family protein (.1.2.3) AT3G05640 271 / 1e-87 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001268 [exp] 830 / 0 AT5G01700 365 / 8e-124 Protein phosphatase 2C family protein (.1.2) Lus10022683 [exp] 661 / 0 AT3G02750 352 / 9e-119 Protein phosphatase 2C family protein (.1.2.3) Lus10014231 [exp] 661 / 0 AT5G01700 360 / 1e-120 Protein phosphatase 2C family protein (.1.2) Lus10000402 [exp] 338 / 2e-111 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10031631 [exp] 334 / 1e-110 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1) Lus10033708 [exp] 332 / 5e-110 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10027122 [exp] 333 / 2e-109 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10039802 [exp] 331 / 3e-109 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10018570 [exp] 330 / 1e-108 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105000 [exp] 536 / 0 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 528 / 0 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 360 / 1e-120 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 341 / 5e-113 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G144100 [exp] 335 / 4e-111 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.019G103100 [exp] 333 / 3e-110 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G473300 [exp] 331 / 8e-109 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.004G066200 [exp] 328 / 5e-108 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.018G059800 [exp] 296 / 1e-97 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.013G012200 [exp] 293 / 5e-96 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10012218 pacid=23172719 polypeptide=Lus10012218 locus=Lus10012218.g ID=Lus10012218.BGIv1.0 annot-version=v1.0 ATGGGAGCCTGTTGTAGCACCGAGTTCCATTTCGGACCTGAGTCCGCCGACGACTCCGCCACCGCCGCCGACCACAAGGATGATTACGACGGCGGCGAAG GGTACGGCGAAGACGACGGCAATGTCATCATCGGTGACTATGGCGCCCGCATCCGCCTCCACGGCTCTTCCAAATACATCGCCATGTACACGCAACAGGG CAAGAAGGGAGTCAATCAGGACGCCATGACCGTATGGGAGGAATTCACAGGGGACAAATCGATGACATTTTGTGGCGTTTTTGACGGTCATGGACCGTAC GGTCATAAAGTGGCGAGACATGTTCGTGATCATTTGCCGACGAAGATCTCTACAGGGATCAAATCGGAGCACCTCACTAGCAATCTGGATAGTTGTGACG TTAGCCATTGCAACGATGATGGTGGCATCGATCATGAATCATCGTCCAACGACGCGAAACGGTCTGTGCTTTTGAATTCGTGGGAAGGGTGTTTGATGAA ATGCTTCAAAGAGATGGATGAAGAACTCAGCCTTGATGCCAGCATCGATAGCTACTGCAGCGGCGCCACCGCCGTCTCCGGAAGGCATTTGCTTGTATCA AACTTGGGCGATTCACGAGCGGTTCTTTGCCGGAAGGGAAACAAAAACCAGCTAATCCCAATCCAACTCACGGTCGATTTGAAACCGAATGTCCCAAGCG AAGCGGAGAGAATAAAGAAGAAGAACGGTAGAGTGTTTGCAATGGAGGAAGAGCCTGAAATCTTCAGGATATGGATGCCTGATGAAGACTGTCCAGGTTT AGCCATGGCTAGAGCTTTCGGAGATTTCTGCCTCAAGGATTATGGCCTCATCTCAACCCCTCAGGTCTCCTACAGAAGGCTCACTAACAATGATGAGTTT GTCGTCTTAGCCACCGACGGAATATGGGACGTGCTCACAAATGAGGAGGTGATAAACATAGTGGCATCAGCAAGGCAGAGATCAACGGCGGCCAAATTAC TGATAAAATATGCGGTCCAGCTATGGAGAACTAGGCATCCAGGTTGCAGAATCGACGATTGCGCGGTGGTTTGCCTTTTCTTGAAGAGCAAAACGATCCT GACAAGGTCCTTCTCGGAGGTGAGCAGAGTGAGCGCGAACCACACAGAGATGGCAGAGAATTTCTCGGAAGTCAGCAAAGCCAGCGTCCACCACTCTGAG ATAGCGGCGGTGCCATTGAAATCAAGGACGGTGAAGCACCAAGTCGGGCGTCCGCCGACAGGACTGGATGAGGGGAGGTCAGAGTCATTTGAGGTAGCGT CTGGATTAAGTCAGAGGAGAGGGGTGAAGTTAACAGAGCCTGTTTGA
AA sequence Show only first row Show all	>Lus10012218 pacid=23172719 polypeptide=Lus10012218 locus=Lus10012218.g ID=Lus10012218.BGIv1.0 annot-version=v1.0 MGACCSTEFHFGPESADDSATAADHKDDYDGGEGYGEDDGNVIIGDYGARIRLHGSSKYIAMYTQQGKKGVNQDAMTVWEEFTGDKSMTFCGVFDGHGPY GHKVARHVRDHLPTKISTGIKSEHLTSNLDSCDVSHCNDDGGIDHESSSNDAKRSVLLNSWEGCLMKCFKEMDEELSLDASIDSYCSGATAVSGRHLLVS NLGDSRAVLCRKGNKNQLIPIQLTVDLKPNVPSEAERIKKKNGRVFAMEEEPEIFRIWMPDEDCPGLAMARAFGDFCLKDYGLISTPQVSYRRLTNNDEF VVLATDGIWDVLTNEEVINIVASARQRSTAAKLLIKYAVQLWRTRHPGCRIDDCAVVCLFLKSKTILTRSFSEVSRVSANHTEMAENFSEVSKASVHHSE IAAVPLKSRTVKHQVGRPPTGLDEGRSESFEVASGLSQRRGVKLTEPV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36250			Protein phosphatase 2C family ...		Lus10012218 [exp]	0	1
AT1G48870			Transducin/WD40 repeat-like su...		Lus10020846 [exp]	6.4	0.7588
AT2G40435			unknown protein		Lus10025257 [exp]	9.4	0.7526
AT3G01270			Pectate lyase family protein (...		Lus10037207 [exp]	10.8	0.7491
AT4G30850		HHP2	heptahelical transmembrane pr...		Lus10036605 [exp]	17.7	0.7127
AT1G13570			F-box/RNI-like superfamily pro...		Lus10003016 [exp]	19.6	0.7340
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	25.3	0.7279
AT1G15170			MATE efflux family protein (.1...		Lus10018135 [exp]	25.8	0.7331
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10035029 [exp]	27.3	0.7502
AT5G10660			calmodulin-binding protein-rel...		Lus10042442 [exp]	27.4	0.6361
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Lus10036068 [exp]	29.2	0.7445

Compare expression of checked genes

Lus10012218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.