Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51670 563 / 0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G72160 319 / 4e-106 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G30690 310 / 5e-102 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G09160 303 / 1e-97 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 258 / 3e-80 PATL2 PATELLIN 2 (.1) AT1G72150 244 / 7e-76 PATL1 PATELLIN 1 (.1) AT4G39180 87 / 1e-18 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 86 / 3e-18 ATSFH12 SEC14-like 12 (.1) AT2G18180 85 / 6e-18 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 82 / 6e-17 ATSFH3 SEC14-like 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001269 [exp] 693 / 0 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10001542 [exp] 346 / 3e-116 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10038435 [exp] 337 / 2e-112 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10009453 [exp] 296 / 3e-99 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10031752 [exp] 286 / 2e-91 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001539 [exp] 273 / 2e-90 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10003552 [exp] 266 / 2e-85 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10033895 [exp] 206 / 2e-60 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031175 [exp] 185 / 3e-57 AT1G30690 273 / 2e-89 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G127700 [exp] 613 / 0 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.001G461400 [exp] 342 / 1e-114 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G106000 [exp] 343 / 1e-113 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 342 / 1e-113 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 340 / 6e-113 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 334 / 8e-111 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 334 / 1e-110 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 332 / 7e-110 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 331 / 4e-109 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G224800 [exp] 263 / 2e-84 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10012219 pacid=23172714 polypeptide=Lus10012219 locus=Lus10012219.g ID=Lus10012219.BGIv1.0 annot-version=v1.0 ATGTGGGGAATCGACCTCCTCAGCTCAACCGACGAAAAAGCCACCGTCATCCTCCTAAAATTCCTCCGAGCCAGAGACTTCCGAGTGGCGGAATCGTTCC AGATGATTTCGAAATGCCTCTCATGGAGGAAAGAATTCGGCGCCGATTCCGTCGTGGAAGAGGATCTGGGGTTCAAAGAGCTGGAAGGAGTGGTTGCTTA TATGCAAGGGTTCGACCGGGAAGGGCACCCGGTTTGTTACAACGCTTATGGTGTTTTTAAAGATAAAGAGCTCTACGAGAAGGTGTTCGGCGACGATGAG AAGCTGAAGAAATTCCTACGGTGGAGAGTTCAGGTGCTGGAAAGAGGAATCAATCTCCTGCATTTTAAACCCAACGGCGTTAATTCGATTATTCAAGTAA CTGATATGAAGGACATGCCGAAGAAGGAGCTACGAGTTGCTTCCAATCATATCCTCTCTCTGTTCCAGGATAACTACCCTGAGATGGTGGCTCGCAAGAT TTTTATAAATGTTCCGTGGTACTTTAGTGTGCTGTACTCGATGTTCAGCCCGTTCTTGACGCAGAGGACGAAGAGCAAGTTCGTCATTTCTAAAGAAGGG AATGTTGCTGAGACTCTGTACAAATTCATAAAGCCAGAAGATGTACCAGTTCAGTATGGAGGCCTGAGGCGACCGGGCGATCTGCACAACGACCCTCCGA AGCCAGCCTCCGAGTTTTCGGTCAAAGGCGGGGAGAAAGTTAACATCCAGATCGAAGGCATCGAGGCGGGTGCGACGATAACGTGGGACATAGTGGTGGG AGGGTGGGAGGTGGAGTACAGCGTGGAGTTCGTTCCGAATGCTGAGGGGAGCTACACGATCGCAGTGGAGAAATGCAGGAAGGTCGGAGGTCACGAAGAG GCGATCCATAACTCGTACACTGCTAGAGAAGGGGGGAAGATGGTGCTCTCTGTTGATAACTCTGTTTCCAGGAGAAGGAAGGTTGCTGCTTATCGGTACT TTGTGCGTAAATCCGCTGTCGTTTAG
AA sequence Show only first row Show all	>Lus10012219 pacid=23172714 polypeptide=Lus10012219 locus=Lus10012219.g ID=Lus10012219.BGIv1.0 annot-version=v1.0 MWGIDLLSSTDEKATVILLKFLRARDFRVAESFQMISKCLSWRKEFGADSVVEEDLGFKELEGVVAYMQGFDREGHPVCYNAYGVFKDKELYEKVFGDDE KLKKFLRWRVQVLERGINLLHFKPNGVNSIIQVTDMKDMPKKELRVASNHILSLFQDNYPEMVARKIFINVPWYFSVLYSMFSPFLTQRTKSKFVISKEG NVAETLYKFIKPEDVPVQYGGLRRPGDLHNDPPKPASEFSVKGGEKVNIQIEGIEAGATITWDIVVGGWEVEYSVEFVPNAEGSYTIAVEKCRKVGGHEE AIHNSYTAREGGKMVLSVDNSVSRRRKVAAYRYFVRKSAVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	0	1
AT3G17840		RLK902	receptor-like kinase 902 (.1)		Lus10041992 [exp]	1.7	0.9032
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10018739 [exp]	2.8	0.8616
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	3.0	0.8674
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10017996 [exp]	3.7	0.8980
AT3G57880			Calcium-dependent lipid-bindin...		Lus10012026 [exp]	5.2	0.8340
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10036627 [exp]	5.7	0.7690
AT1G16520			unknown protein		Lus10031193 [exp]	6.3	0.8468
AT1G16520			unknown protein		Lus10031771 [exp]	6.9	0.7922
AT2G45340			Leucine-rich repeat protein ki...		Lus10030279 [exp]	7.3	0.8518
AT1G75640			Leucine-rich receptor-like pro...		Lus10033926 [exp]	8.1	0.8072

Compare expression of checked genes

Lus10012219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.