Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08800 591 / 0 SIEL SHORT-ROOT interacting embryonic lethal, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000343 [exp] 1484 / 0 AT3G08800 602 / 0.0 SHORT-ROOT interacting embryonic lethal, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G127500 [exp] 842 / 0 AT3G08800 612 / 0.0 SHORT-ROOT interacting embryonic lethal, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10012221 pacid=23172670 polypeptide=Lus10012221 locus=Lus10012221.g ID=Lus10012221.BGIv1.0 annot-version=v1.0 ATGGAGCATCAGCTGTGGAGCTTGTGTGAACGCTCTATCGAAGCAGGCGAGCCTTCGTGTCGCCATTCCATGGCTTCCATGAGCTCGCTTATCGTCAATC CTCACACCTCAACTTCCACTATGTCGTCGATCCTCGAGACCTTAGCTCGTTCTCTTCAGCGCGGCGGGGATTCGGCATCCGGCCATCAAACTCTCAAGCT GCTAGCTGATATCGCCTCGCACCGTCCTCATCTATCCCGCGCTGTATTTGACTGCCTCCTTTCCAGCTTCTACTCGCGGCTCTCCACCGCCGAGTCGCCC GCCTTCGCTTCCGAGATACTGGCCACTCTCGCTTCGCTGTCAGCTAAGGACGGGAGCTTAGTTATCGAGCTCGATGATCAGCTGTTTGTTTCGTTGTGCT TTGTTCCGTCGGTCTCCGTGCGATTGAAACTTCTCAGAAATGCGGAGATGTTCGGCTTAAGAGCGTCAGTTTTGTTTACTGTGTTCTTAGGTTTCACGAA GGATCCTTATCCTTACGTGAGAAAAGCTGCATTGGATGGCCTAGCTAATTTATCTACATGCGATGATTTTGAGGATATTGGCTTGATCGAAGGATGCTAC AATAGAGCTGTTGAGCTTCTGCGGGACGCTGAGGATTGTGTACGTTCTGCAGCAGTTCGCGTGGTCGTTGGGTGGGGTCAAATGCTCATAGCAGCTCTTG AAGAGAAGGATAAAAGAGATTGGTCGAATTTAGTATTTATTCAGCTATGTTCTGTAGTTAGAGATATGAGTCTAGAGGTCAGAATTGAAGCTTTTGATGC CCTTGGGAAGTTAAAATTGGTATCCGAGGACATTTTGTTACAAAGTCTGTCTAAGAAGGTAACGGGAGCATTGAAAGAGAGGATATTTGAAGCTCAAAGC AGTACAAGTGTTTTTCAAAGGTTTGCTTCGCATGGTGCAGGAGCTTTTCTGCATGGGCTTGAGGATGAATTCCACCAGGTGCGAAATTCTGCTTGTTGCT CATTGCGTAAGCTGGTCATCCTCTCCAATAAGTTTGCCGAGCAGGCCTTGAATCTGTTAATGGACATGCTGAATGATCATGCAATAGCTGTCAGGTTAGC AGCTTTGGAAACATTGCATTATATGGCAAATCATAAGTGCCTGAATGTACAGGAAGTACACATGCACATGTTCCTTGGCACTCTGGCTGATAAGAGTGAC AAAATCAGATATGCCGCCAGGAAAATTTTCAGATCAATGAAACTGTCTAAAGTGGAGTTTTTTCGAAGCTCAGTCAAAAGCCTTCTCAAGAATTTGGAGG TGCATCCCAAGGAGGAAGCTGATATCTTTTCTGTCTTGTTTCACATGGGGCGAAACCACGGCTATTTTGCTTCACAAGTTATCAAGCATGTTTCTGACAA GCTGGAGCCCGTTTCTGAAGGAGAAATGAGCTTTGGTAGTGCTAAATCAGCAGCTTACCTTGTACTTTCCATCTCAGCTCCACTTTCGTCGGATCACAGG GAAATAAGTATACCACCACAGTTATTTTCATACGCAGTCACAATTCTGGGAAGGATCTCTCTTGCTTTGGATGACATTATGGACCGAAATTCCCTCTTAG TGTATTTAACCGAAAAGAGTGGATCATCCAGCTTGGTTGCACAATTGATAGGGGAGGTAACATTATCTTCACTGAACCATGGTATTTCTAATCTCGATGA CGAAAAAAGTAATATAACACAAGCTGGCAATCGGATTTCATGGCAGCTGGTACCATGTGGCTCGAGTGGTAATACAACACCGCCATTCGCATTACCTTGT CAAAAGGATGATGAAATTCTGAAATGCATGAATCTTATACTTGAAAGAGTCCAACATATTTGGTTGTTCGGAAAATTAAGCAGCAACGCCAAAGCAATCA GAACTATCAGTGCTTGCAAAGAAGAGGTATCTCGGTACAGGTCTACATCCGTTGAATCTGCCGGTGCATTAGCGTTTACGCTGCATTACCTCCGAGTCAT TAAGTTACTCGCCAAAATATCGGGGCATATTTTCTGCATGGTACGTTCTAACCCGATAAGTGAATTGGAGTTGCTGTTAAGCAAGTTAGACCGCAGGCTT AGAGAAATAAGGTCCAGATTTGTAGGGTTATCTAAAGAAGAGGAGCTGCAAATCTTAGAGCTTGTCCTTTTTGCTTGCGTATTGAAGTTGGCGAAAGCCG ACTTCTTCTGCTACTGGACTACCACTCTGAAAAGCTTATCTACTACCATTTCGCACGTAAAGTCTCTCCTCCAGGACGAATTTGCTGAACCGTCGAGCTT CATTAAGCTAGCTTTAGACCAGGTTGGTGGGACCAACCTCGTCACGCCTCTCTTGTTCAGAAAGTTGGCCGATAACTTTTCCCTTAGACAGTTCACTTTA CGCAGTCGAATCACTCACATTAGAGTAGAACTGGACATCCCCGGTAATGATTCGGAGAATCCTCTTCCATTTGTCGCGGGATTGCCTGTTGCGATCCCGT TGGAGATCATTTTGCATAATGTGTCTGGTGGTGAGAGGATGTGGTTGAGAATTACAGCAGATGGAGAGCTGACACAGTGGACGTTCTTAGATCAGAAGAG TCTACAAGTGTTCTCCGATGGGGTGATGAAGATCTTTATGTCTGTACCGTTTTGCAGAACCCCAAATGCTGGTGCGTTAAGTTTGAGAGTTTGTGTTGGT ATGGAATGTACGTTCGAGAACGTTCAGTTAATCCGAGGACGCGGAGGTCCGAAACACACGTTAGCGTATATTTCCGAGGAAAAACAAGTTTGGCTCCGTA GAGTTCCGAGGAAGAAGTAA
AA sequence Show only first row Show all	>Lus10012221 pacid=23172670 polypeptide=Lus10012221 locus=Lus10012221.g ID=Lus10012221.BGIv1.0 annot-version=v1.0 MEHQLWSLCERSIEAGEPSCRHSMASMSSLIVNPHTSTSTMSSILETLARSLQRGGDSASGHQTLKLLADIASHRPHLSRAVFDCLLSSFYSRLSTAESP AFASEILATLASLSAKDGSLVIELDDQLFVSLCFVPSVSVRLKLLRNAEMFGLRASVLFTVFLGFTKDPYPYVRKAALDGLANLSTCDDFEDIGLIEGCY NRAVELLRDAEDCVRSAAVRVVVGWGQMLIAALEEKDKRDWSNLVFIQLCSVVRDMSLEVRIEAFDALGKLKLVSEDILLQSLSKKVTGALKERIFEAQS STSVFQRFASHGAGAFLHGLEDEFHQVRNSACCSLRKLVILSNKFAEQALNLLMDMLNDHAIAVRLAALETLHYMANHKCLNVQEVHMHMFLGTLADKSD KIRYAARKIFRSMKLSKVEFFRSSVKSLLKNLEVHPKEEADIFSVLFHMGRNHGYFASQVIKHVSDKLEPVSEGEMSFGSAKSAAYLVLSISAPLSSDHR EISIPPQLFSYAVTILGRISLALDDIMDRNSLLVYLTEKSGSSSLVAQLIGEVTLSSLNHGISNLDDEKSNITQAGNRISWQLVPCGSSGNTTPPFALPC QKDDEILKCMNLILERVQHIWLFGKLSSNAKAIRTISACKEEVSRYRSTSVESAGALAFTLHYLRVIKLLAKISGHIFCMVRSNPISELELLLSKLDRRL REIRSRFVGLSKEEELQILELVLFACVLKLAKADFFCYWTTTLKSLSTTISHVKSLLQDEFAEPSSFIKLALDQVGGTNLVTPLLFRKLADNFSLRQFTL RSRITHIRVELDIPGNDSENPLPFVAGLPVAIPLEIILHNVSGGERMWLRITADGELTQWTFLDQKSLQVFSDGVMKIFMSVPFCRTPNAGALSLRVCVG MECTFENVQLIRGRGGPKHTLAYISEEKQVWLRRVPRKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Lus10012221 [exp]	0	1
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10030202 [exp]	1.4	0.8446
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10027916 [exp]	1.4	0.8407
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10002684 [exp]	3.0	0.8406
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10033289 [exp]	5.3	0.8356
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	7.3	0.7868
AT4G11790			Pleckstrin homology (PH) domai...		Lus10029606 [exp]	10.0	0.7561
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10036730 [exp]	20.4	0.7763
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	22.4	0.7878
AT2G27285			Coiled-coil domain-containing ...		Lus10020557 [exp]	24.5	0.7375
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10040795 [exp]	28.0	0.7707

Compare expression of checked genes

Lus10012221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.