Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38360 298 / 9e-104 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT3G56110 249 / 2e-84 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT5G01640 239 / 2e-80 PRA1.B5 prenylated RAB acceptor 1.B5 (.1) AT2G40380 227 / 1e-75 PRA1.B2 prenylated RAB acceptor 1.B2 (.1) AT5G05380 223 / 6e-74 PRA1.B3 prenylated RAB acceptor 1.B3 (.1) AT5G07110 186 / 2e-59 PRA1.B6 prenylated RAB acceptor 1.B6 (.1) AT4G00005 113 / 5e-32 PRA1 (Prenylated rab acceptor) family protein (.1) AT1G55190 110 / 2e-30 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT3G13710 103 / 3e-27 PRA1.F4 prenylated RAB acceptor 1.F4 (.1) AT1G08770 102 / 7e-27 PRA1.E prenylated RAB acceptor 1.E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002853 [exp] 372 / 2e-132 AT2G38360 305 / 4e-106 prenylated RAB acceptor 1.B4 (.1) Lus10017425 [exp] 251 / 1e-84 AT2G38360 281 / 9e-97 prenylated RAB acceptor 1.B4 (.1) Lus10007533 [exp] 249 / 3e-84 AT2G38360 281 / 6e-97 prenylated RAB acceptor 1.B4 (.1) Lus10009842 [exp] 247 / 1e-83 AT2G38360 278 / 1e-95 prenylated RAB acceptor 1.B4 (.1) Lus10042246 [exp] 243 / 2e-81 AT2G38360 250 / 4e-84 prenylated RAB acceptor 1.B4 (.1) Lus10026404 [exp] 236 / 5e-79 AT2G38360 253 / 5e-86 prenylated RAB acceptor 1.B4 (.1) Lus10022680 [exp] 224 / 4e-75 AT2G38360 232 / 1e-78 prenylated RAB acceptor 1.B4 (.1) Lus10014234 [exp] 145 / 4e-44 AT2G38360 164 / 1e-51 prenylated RAB acceptor 1.B4 (.1) Lus10034363 [exp] 117 / 9e-33 AT1G55190 197 / 1e-64 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126400 [exp] 261 / 7e-89 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.008G074000 [exp] 250 / 7e-85 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.008G074033 [exp] 250 / 7e-85 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.006G104400 [exp] 250 / 1e-84 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.010G183300 [exp] 249 / 2e-84 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.019G124100 [exp] 202 / 6e-66 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.005G219100 [exp] 135 / 8e-40 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G044000 [exp] 127 / 1e-36 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 125 / 7e-36 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.002G043800 [exp] 119 / 2e-33 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10012224 pacid=23172720 polypeptide=Lus10012224 locus=Lus10012224.g ID=Lus10012224.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCTTCATCCCCTCCAATCCTCCCGATCTCCAACTCACAATCCATCTCCACCAGCACCGCCGAATCCAAGCCACCGATCGCCACCCCAGCCT TCCGCTCCTTCATTAACAAGATCTCCGACACCGTCCGCAACGGCCTCTCACAGCGCCGTCCCTGGGCAGAGCTCGCCGACCGATCCGCCTTCTCCAAGCC GGACTCCGTCTCCGACGCTACTCTCCGCCTGCGCAAGAACTACGCCTACTTCCGCGTCAATTACCTCGCCGCCGTCGCCGCGATCCTCGCCTTCTCGTTA ATCTCCCATCCTTTCTCCCTCCTGCTCCTGATCGGACTCCTCGCTTCGTGGATCTTCCTCTACCTCTTCCGCCCCGCCGATCAGCCACTTGTCATTCTCG GCCGTACATACACCGACATGGAGACGATCGGGCTCCTCGCCTTGCTCAGCATCGTCGTCGTTTTCCTCACCAGCGTCGGATCGATCCTCATCTCTGGTCT CATGGTTGGGGCAGCCATCGTGTGTGCGCATGGCGCGTTTAGGGTCCCTGAGGATCTGTTTCTCGACGAGCAGGAGCCTGCCGCCGCTACTGGATTCCTT TCGTTCCTCGGTGGCGCAGCTTCCAACGTAGCTGCGACTACTGCCGCCCGTGTCTGA
AA sequence Show only first row Show all	>Lus10012224 pacid=23172720 polypeptide=Lus10012224 locus=Lus10012224.g ID=Lus10012224.BGIv1.0 annot-version=v1.0 MAAASSPPILPISNSQSISTSTAESKPPIATPAFRSFINKISDTVRNGLSQRRPWAELADRSAFSKPDSVSDATLRLRKNYAYFRVNYLAAVAAILAFSL ISHPFSLLLLIGLLASWIFLYLFRPADQPLVILGRTYTDMETIGLLALLSIVVVFLTSVGSILISGLMVGAAIVCAHGAFRVPEDLFLDEQEPAAATGFL SFLGGAASNVAATTAARV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10012224 [exp]	0	1
AT1G13360			unknown protein		Lus10034310 [exp]	1.4	0.8952
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	1.7	0.8948
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10019526 [exp]	2.0	0.9182
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	4.2	0.8488
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10036571 [exp]	4.2	0.8663
					Lus10018622 [exp]	5.5	0.8764
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10033535 [exp]	5.7	0.8563
AT4G14450		ATBET12	unknown protein		Lus10021208 [exp]	7.0	0.8639
AT2G25250			unknown protein		Lus10041025 [exp]	7.5	0.8835
AT4G25380		AtSAP10, SAP10	Arabidopsis thaliana stress-as...		Lus10038901 [exp]	7.9	0.8305

Compare expression of checked genes

Lus10012224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.